Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00786 and BPUM_0431
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00786___ydbR.1.24716.seq
# -bsequence dna-align/BPUM_0431___ydbR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00786___ydbR-BPUM_0431___ydbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00786___ydbR-BPUM_0431___ydbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00786___ydbR
# 2: BPUM_0431___ydbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1566
# Identity: 1206/1566 (77.0%)
# Similarity: 1206/1566 (77.0%)
# Gaps: 105/1566 ( 6.7%)
# Score: 4793.0
#
#
#=======================================
BSNT_00786___ 0 -------------------------------------------------- 0
BPUM_0431___y 1 ATGATCATTCACGAGATTACTGAAACAGCAATTAGAAGGAGTTTGAATAA 50
BSNT_00786___ 1 -TTGACTATAACGTTTCAAGATTTTAATTTAAGTTCTGA---TCTCATGA 46
||||||||||||||||||||||||.|.||||| .|| ||||||||
BPUM_0431___y 51 TTTGACTATAACGTTTCAAGATTTTCAATTAAG---CGAAAGTCTCATGA 97
BSNT_00786___ 47 AAGCAATTAATCGTATGGGATTTGAAGAAGCAACACCGATTCAGGCACAA 96
||||.|||||.||.|||||||||||||||||||||||||||||.||..||
BPUM_0431___y 98 AAGCTATTAACCGCATGGGATTTGAAGAAGCAACACCGATTCAAGCGGAA 147
BSNT_00786___ 97 ACGATACCGCTCGGACTTTCA-AATAAAGACGTCATTGGACAAGCGCAAA 145
||.||.||.|||||.| |||| ||||||||.||||||||||||||.||||
BPUM_0431___y 148 ACAATTCCTCTCGGTC-TTCAGAATAAAGATGTCATTGGACAAGCACAAA 196
BSNT_00786___ 146 CAGGTACAGGTAAAACAGCTGCGTTTGGTATACCCCTTGTTGAAAAAATT 195
||||.|||||.|||||.||.|||||||||||.||.|||||.|||||||||
BPUM_0431___y 197 CAGGAACAGGAAAAACTGCAGCGTTTGGTATTCCTCTTGTAGAAAAAATT 246
BSNT_00786___ 196 AACCCCGAGTCTCCTAATATTCAAGCAATCGTAATCGCGCCAACCCGTGA 245
.||||.|.||||||.||.||.|||||.||..|.||.||||||||..|.||
BPUM_0431___y 247 GACCCAGCGTCTCCAAACATCCAAGCGATTATCATTGCGCCAACAAGAGA 296
BSNT_00786___ 246 ATTAGCCATTCAAGTATCTGAAGAATTGTATAAAATCGGACAAGATAAAC 295
||||||.|||||||||||||||||..|.||.|||||.||.|||||.||.|
BPUM_0431___y 297 ATTAGCGATTCAAGTATCTGAAGAGCTATACAAAATTGGCCAAGACAAGC 346
BSNT_00786___ 296 GTGCGAAGGTTCTTCCTATTTACGGCGGACAGGATATTGGACGGCAAATC 345
|||||...||.|||||.||||||||.|||||.||||||||.||.||||||
BPUM_0431___y 347 GTGCGCGCGTACTTCCGATTTACGGTGGACAAGATATTGGTCGCCAAATC 396
BSNT_00786___ 346 CGGGCGTTAAAGAAGAATCCGAATATTATTGTCGGAACACCTGGACGTCT 395
||..|..|.|||||.|||||..||||.||.||.||.||.||.||||||.|
BPUM_0431___y 397 CGTTCACTCAAGAAAAATCCTCATATCATCGTAGGGACTCCAGGACGTTT 446
BSNT_00786___ 396 TCTTGACCACATCAATCGCCGCACCATTCGT-TTAAACAATGTAAATACT 444
.||.||.|||||.||.||.||.||.||.||| ||.|| |||||..|.|||
BPUM_0431___y 447 ACTCGATCACATTAACCGTCGTACAATGCGTCTTCAA-AATGTTGAAACT 495
BSNT_00786___ 445 GTTGTAATGGATGAAGCGGATGAAATGCTGAACATGGGATTCATTGATGA 494
|||||..|.||||||||.||.||||||||.||||||||.|||||.||.||
BPUM_0431___y 496 GTTGTGCTTGATGAAGCAGACGAAATGCTAAACATGGGTTTCATCGAAGA 545
BSNT_00786___ 495 TATTGAATCTATCCTTTCAAACGTGCCAAGCGAGCATCAGACACTTCTGT 544
.||||||||.|||||||||||.||.|||||.||.||.||.||||||.|.|
BPUM_0431___y 546 CATTGAATCGATCCTTTCAAATGTACCAAGTGAACACCAAACACTTTTAT 595
BSNT_00786___ 545 TCTCTGCCACAATGCCTGCGCCGATCAAACGCATTGCAGAGCGCTTTATG 594
|||||||.|||||||||||.||.||.||.|||||||||||.||.||.|||
BPUM_0431___y 596 TCTCTGCGACAATGCCTGCACCAATTAAGCGCATTGCAGAACGTTTCATG 645
BSNT_00786___ 595 ACTGAGCCGGAACACGTAAAAGTAAAAGCGAAAGAAATGACGGTTTCTAA 644
||..|.||.||||||||||||||||||||||||||||||||.||.|||||
BPUM_0431___y 646 ACAAACCCAGAACACGTAAAAGTAAAAGCGAAAGAAATGACTGTCTCTAA 695
BSNT_00786___ 645 CATTCAGCAGTTCTATTTGGAAGTGCAAGAACGCAAAAAATTCGATACAC 694
|||.||.||||||||.|||||..|.||.||.||.|||||.||.||||||.
BPUM_0431___y 696 CATCCAACAGTTCTACTTGGATATCCATGAGCGTAAAAAGTTTGATACAT 745
BSNT_00786___ 695 TGACTCGTCTTCTTGACATTCAGTCTCCTGAGCTTGCGATCGTATTCGGA 744
|||||||.||||||||||||||.||.|||||||||.|.||.||.|||||.
BPUM_0431___y 746 TGACTCGCCTTCTTGACATTCAATCACCTGAGCTTTCAATTGTCTTCGGC 795
BSNT_00786___ 745 CGTACAAAACGCCGTGTCGATGAACTGGCTGAAGCCCTGAACCTTCGCGG 794
|||||||||||.||.||.||.|||.||.|||||||.||.||||||.|.||
BPUM_0431___y 796 CGTACAAAACGTCGCGTTGACGAATTGACTGAAGCACTTAACCTTAGAGG 845
BSNT_00786___ 795 ATATGCAGCTGAAGGAATTCACGGTGACTTAACGCAGGCGAAACGTATGG 844
.|||.||||||||||.|||||.|||||||||||.||.|||||||||||||
BPUM_0431___y 846 TTATACAGCTGAAGGTATTCATGGTGACTTAACTCAAGCGAAACGTATGG 895
BSNT_00786___ 845 TTGCGCTTCGTAAATTTAAAGAAGGCGCAATCGAAGTTCTTGTCGCAACT 894
||||||||||||||||.||||||||..|||||||.||.|||||||||||.
BPUM_0431___y 896 TTGCGCTTCGTAAATTCAAAGAAGGTTCAATCGATGTGCTTGTCGCAACA 945
BSNT_00786___ 895 GATGTTGCCGCTCGCGGACTTGATATCTCAGGTGTTACACACGTATACAA 944
||.|||||.||.||.|||||||||||||||||.||.||||||||.||.||
BPUM_0431___y 946 GACGTTGCAGCACGTGGACTTGATATCTCAGGCGTAACACACGTGTATAA 995
BSNT_00786___ 945 CTTCGACGTGCCTCAAGATCCTGAAAGCTACGTTCACCGTATCGGAAGAA 994
|||.|||||.||.||||||||.|||||||||||.||||||||.|||.|.|
BPUM_0431___y 996 CTTTGACGTACCACAAGATCCAGAAAGCTACGTACACCGTATTGGACGTA 1045
BSNT_00786___ 995 CGGGCCGTGCAGGAAAAACAGGTATGGCGATGACGTTCATTACACCGCGT 1044
|.||.|||||.|||...|||||||||||||||||.|||||.|||||.|||
BPUM_0431___y 1046 CTGGACGTGCTGGACGTACAGGTATGGCGATGACATTCATCACACCTCGT 1095
BSNT_00786___ 1045 GAGAAAAG-CATGCTTCGCGCAATTGAACAAACAACAAAACGCAAAATGG 1093
|| ||||| .||||||||.||.||.||.||||||||.|||||.|||||||
BPUM_0431___y 1096 GA-AAAAGATATGCTTCGTGCGATCGAGCAAACAACTAAACGTAAAATGG 1144
BSNT_00786___ 1094 ACCGCATGAAGGAGCCTACACTTGATGAAGCGTTAGAAGGCCAGCAACAG 1143
|.||.|||||.||.||.|||||.|||||.||..|.|||||.||.|||||.
BPUM_0431___y 1145 ATCGTATGAAAGAACCAACACTAGATGAGGCAATCGAAGGACAACAACAA 1194
BSNT_00786___ 1144 GTTACTGTTGAACGTCTTCGCACAACAATCAGTGAAAACAACCTGAACTT 1193
||.||||||||.|||||.|||||||..|||||||||||||||.|.|||||
BPUM_0431___y 1195 GTAACTGTTGATCGTCTGCGCACAATCATCAGTGAAAACAACTTAAACTT 1244
BSNT_00786___ 1194 CTACATGACAGCGGCAGCTGAGCTGCTTGAAGATCATGATGCAGTAACAG 1243
||||||||||||.||||||||..|.||.||||||||||||.|.||.||||
BPUM_0431___y 1245 CTACATGACAGCAGCAGCTGAATTACTCGAAGATCATGATTCTGTCACAG 1294
BSNT_00786___ 1244 TGGTTGCGGCGGCTATCAAAATGGCTACTAAAGAGCCAGACGACACACCG 1293
||||||||||.||.|||||||||...||.||||||||.||.|..||.||.
BPUM_0431___y 1295 TGGTTGCGGCTGCCATCAAAATGATGACAAAAGAGCCGGATGCAACGCCT 1344
BSNT_00786___ 1294 GTTCGCTTAACAGACGAAGCGCCGATGG--TCAGCAAACGCTA---CAAG 1338
|||||.||.|||||.|||||.||.|||| ||| ||||||.| |||.
BPUM_0431___y 1345 GTTCGTTTGACAGATGAAGCACCAATGGTTTCA--AAACGCAATCGCAAC 1392
BSNT_00786___ 1339 AACCAGC-GCTCTTCTAAACGCAGAGACGGTCAAGGC---GGCGGCTACC 1384
|||| || |||||||||||||.|||||||||...||| ||||||||.|
BPUM_0431___y 1393 AACC-GCAGCTCTTCTAAACGTAGAGACGGTGGCGGCGGAGGCGGCTATC 1441
BSNT_00786___ 1385 GCGGCGGAAAAGGGAAAAGCAACAACCGTTCTTCCTA---TGACAAAAAG 1431
|| |||||| |.||||||.||.|| ||||||||||
BPUM_0431___y 1442 GC----------GGAAAA-----AGCCGTTCATCTTACGGTGACAAAAAG 1476
BSNT_00786___ 1432 CG---TTCAAACGATCGC---CGTTCTTCAGGTGACAGACGCCAGAAAAA 1475
|| ||||||.||.||| ||||||||..|.||..|.||.||.||.||
BPUM_0431___y 1477 CGTTCTTCAAATGACCGCAATCGTTCTTCTAGCGATCGCCGTCAAAAGAA 1526
BSNT_00786___ 1476 ATCTT------ACTAA 1485
||||| |||||
BPUM_0431___y 1527 ATCTTATAACAACTAA 1542
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