Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00768 and BPUM_0420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00768___ydbI.1.24716.seq
# -bsequence dna-align/BPUM_0420___ydbI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00768___ydbI-BPUM_0420___ydbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00768___ydbI-BPUM_0420___ydbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00768___ydbI
# 2: BPUM_0420___ydbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1098
# Identity: 730/1098 (66.5%)
# Similarity: 730/1098 (66.5%)
# Gaps: 120/1098 (10.9%)
# Score: 2252.5
#
#
#=======================================
BSNT_00768___ 1 ATGGCCGC-TTTAGTTAAATTTTTTC--AGCACCCGGGAGTAAGGCGTTT 47
|||||.|| ||| |||||.||.||| |..|||| ||.||.|.|||.||
BPUM_0420___y 1 ATGGCAGCATTT--TTAAAATTGTTCGAAAAACCC-GGTGTTAAGCGGTT 47
BSNT_00768___ 48 CTCCATCTTTGTCGTGTTAACTGGTGTGTTATATCTATTTAAGA-GCATG 96
.||..|.|||||.||.|||.|....|..||||||||| |||||| |.|||
BPUM_0420___y 48 TTCTGTATTTGTAGTATTAGCCACAGCCTTATATCTA-TTAAGAGGAATG 96
BSNT_00768___ 97 ATCAACTTAATATTGCTT-ACCTTTATTTTCACATTTCTAATGGATCGTT 145
||.||.||||| |..||| |||||.||.|||||.|||.|.|||.||||.|
BPUM_0420___y 97 ATGAATTTAAT-TCTCTTGACCTTCATATTCACCTTTTTGATGAATCGGT 145
BSNT_00768___ 146 TGGAGCTTGTCGT--GCGGCAGTTTGTAAGCCGGTTCTTCCGCGTGA--- 190
|.||....|||.| |.||| |||.||||.|| ||||| |||
BPUM_0420___y 146 TAGAAGAGGTCATTAGAGGC--TTTTTAAGTCG---CTTCC---TGAAAA 187
BSNT_00768___ 191 ---GCCAG----CGGGTTGTCATTACGTTTCTTTACATTTTGCTGGCT-G 232
|.||| || ||.|||||..||.|.||.|||.|..||||| |
BPUM_0420___y 188 TAGGGCAGAAATCG----GTTATTACCATTTTGTATATTCTTTTGGCTGG 233
BSNT_00768___ 233 TGCTGCTT-ACAGTCGGGGGCTTTGTGTTTTATCCGGTCGTCGCGGCGCA 281
|| |.|| ||..|.||.||.||.||||||...||..||.||||....||
BPUM_0420___y 234 TG--GATTGACGTTTGGCGGATTCGTGTTTGTGCCAATCATCGCCAAACA 281
BSNT_00768___ 282 GATCCAGCAGCTGGTT---------AAGCAGATTAAACATATTGCGTATC 322
|.|..||||.||..|| ||| ||| |||||..|.|
BPUM_0420___y 282 GGTGGAGCAACTATTTCATTTAGGAAAG------AAA---ATTGCAGACC 322
BSNT_00768___ 323 ACCCTGACAGCAT---CCCTTTCTTTGATGAGATCACCAGTGTCTTCGGA 369
|.|| |||..|| ||| ||||||||||..|||||||..||.||||||
BPUM_0420___y 323 ATCC--ACAAAATTTACCC-TTCTTTGATGTCATCACCAACGTATTCGGA 369
BSNT_00768___ 370 GATATT--AACATCAG-TTCATATGTCAAAG-AAGGCTTCAATGTAGTGT 415
|||.|| ||.||||| ||..|.|| || ||||.||.|||.|..|.|
BPUM_0420___y 370 GATTTTAAAATATCAGCTTACTTTG----AGAAAGGGTTTAATTTCCTCT 415
BSNT_00768___ 416 ATACGTATCTGGCCGATATCAGCACATTCGGCTTGCAGGTCGTGATGGCG 465
||||.||..|..|.|||.||||.||.|||.|..|.||.|||.|.|||.|.
BPUM_0420___y 416 ATACATACTTAACAGATTTCAGTACGTTCAGTATCCAAGTCATTATGTCC 465
BSNT_00768___ 466 CTCATTCTCAGCATGTTTTTCTTATTTGAGAAAAAACGGCT--TTCTGAA 513
.|.||..|.||||||||.|||.|.||.||.|||.||||.|| ||| ||
BPUM_0420___y 466 TTAATATTAAGCATGTTCTTCCTGTTCGAAAAAGAACGCCTCATTC--AA 513
BSNT_00768___ 514 TTCATGGCGAAATTTAAAACGAGCAAA----CTGAGGGTCTTTTATGAGG 559
||||||...||.||.||||||||.||| || ||.||.|||.|.|
BPUM_0420___y 514 TTCATGAACAAGTTCAAAACGAGTAAAATCTCT----GTGTTCTATCACG 559
BSNT_00768___ 560 AAATTGCTTTTTTTGGAAGCAAATTTGCAAGAACGTTCGGCAAGGTGCTC 609
||||.||.||.||||||.|.||||||.|.|||||||||||.|||||.|||
BPUM_0420___y 560 AAATCGCCTTCTTTGGACGTAAATTTTCCAGAACGTTCGGAAAGGTACTC 609
BSNT_00768___ 610 GAGGCTCAATTTATCATTGC-GCTCGTCAACTGTATTCTGACGTTTATCG 658
||.||.||.|||||.||||| .|| ||.||||||.||.|.||....||.|
BPUM_0420___y 610 GAAGCACAGTTTATTATTGCAACT-GTTAACTGTGTTTTAACAACCATTG 658
BSNT_00768___ 659 CGCTTTGGATTATGCATTTTCCGCAGCTGTTTGGGCTTTCGATTATGGTG 708
||||..|.||||||...||.||.||..|.|||||..|..||.|.|||||.
BPUM_0420___y 659 CGCTAGGTATTATGGGATTCCCTCAATTATTTGGATTAGCGGTCATGGTC 708
BSNT_00768___ 709 TTCTTCCTTGGGTTGATCCCTGTAGCAGGCGTCGTCATTTCCCTGATTCC 758
||.||.||.||.||.|||||.||.|||||.||.||.||.||.||.|||||
BPUM_0420___y 709 TTTTTGCTAGGCTTAATCCCAGTCGCAGGTGTGGTTATCTCACTTATTCC 758
BSNT_00768___ 759 GCTCAGCATTATCGCCTACA-GCACTGGCGGCGGAATGTATGTGCTCTAC 807
.||||||||.||.||.||.| || .|||.|||||.||||||||.||.||.
BPUM_0420___y 759 CCTCAGCATCATTGCGTATACGC-TTGGGGGCGGCATGTATGTCCTGTAT 807
BSNT_00768___ 808 ATTGTCCTTGTCATATTCGCCATTCATGCGATCGAAACATATTTCTTAAA 857
||.||.|||||.||..||..|||.|||||.||.|||.|.|||||||||||
BPUM_0420___y 808 ATCGTGCTTGTGATCGTCATCATCCATGCCATTGAAGCCTATTTCTTAAA 857
BSNT_00768___ 858 TCCGAAGCTGATGTCGGCGAAAACAGAGCTGCCAATCTTTTTCACCTTCA 907
.||||||||.|||||.||.||||||||.||.||.||.||.|||||.||.|
BPUM_0420___y 858 CCCGAAGCTCATGTCAGCAAAAACAGAACTCCCTATTTTCTTCACATTTA 907
BSNT_00768___ 908 CTGTACTCATTTTCTCTGAACACTTTTTCGGCATTTGGGGTTTAATTATC 957
.|||.||.||.|||||||||||||...||||.||||||||..|.|||||.
BPUM_0420___y 908 TTGTGCTGATCTTCTCTGAACACTACATCGGGATTTGGGGACTCATTATT 957
BSNT_00768___ 958 GGGATTCCGATCTTTGTGTTTCTCCTTGATATTCTGGATGTCACCAACAA 1007
||.||.||.||||||||||||.|.||.||||||.||||.|||||||||||
BPUM_0420___y 958 GGTATACCAATCTTTGTGTTTATTCTAGATATTTTGGAGGTCACCAACAA 1007
BSNT_00768___ 1008 GGAAGATAG--GTCTAAAGGACCCCGAGAGAATAGCGATAAAAAGTAG 1053
|||.||.|| || |||
BPUM_0420___y 1008 GGAGGAAAGTAGT-TAA------------------------------- 1023
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