Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00766 and BPUM_0418
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00766___dctR.1.24716.seq
# -bsequence dna-align/BPUM_0418___dctR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00766___dctR-BPUM_0418___dctR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00766___dctR-BPUM_0418___dctR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00766___dctR
# 2: BPUM_0418___dctR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 741
# Identity: 474/741 (64.0%)
# Similarity: 474/741 (64.0%)
# Gaps: 117/741 (15.8%)
# Score: 1396.5
#
#
#=======================================
BSNT_00766___ 1 ATGGCTCGTAAAGAATGGAAGGTTCTGCTCATTGAAGACGATCCGATGGT 50
|||.||| |||.| |||||.||..|.||||||||.|||||||||||
BPUM_0418___d 1 ATGACTC----AGATT--AAGGTGCTATTAATTGAAGATGATCCGATGGT 44
BSNT_00766___ 51 TCAAGAGGTCAATAAGGATTTCATTACAACTGTTAAAGGCGTT--ACTGT 98
.|||||.||.||||||||.|||||||..|.||||...|||.|| |.||
BPUM_0418___d 45 GCAAGAAGTGAATAAGGAGTTCATTAAGAGTGTTCCTGGCTTTCAAGTG- 93
BSNT_00766___ 99 CTGT-GCAACGGCAGGAAACGGAGAGGAAGGCATGAAGCTGATTAAAGAA 147
|| ||||..|||||.||.||.|||.|.||.||..||||.||.||||||
BPUM_0418___d 94 --GTGGCAATCGCAGGTAATGGGGAGCAGGGAATCCAGCTCATCAAAGAA 141
BSNT_00766___ 148 GAACAGCCGGATCTCGTCATTCTCGATGTGTACATGCCGAAAAAAGACGG 197
...|..||.||.||.||..|.|||||.||.||.|||||.||||||||.||
BPUM_0418___d 142 ATTCGTCCAGACCTTGTTGTCCTCGACGTATATATGCCAAAAAAAGATGG 191
BSNT_00766___ 198 CATCAAGAC-CTTGCAGGAGATCAGAAAGCAAAAGCTTGAAGTGGATGTC 246
|||.||||| ||| ||.||.||.||||||||||||.|..|.|||||.||.
BPUM_0418___d 192 CATGAAGACGCTT-CAAGACATTAGAAAGCAAAAGATACAGGTGGACGTG 240
BSNT_00766___ 247 ATTGTCGTCTCCGCTGCAAAAGACAAGGAAACGATCT--CACTCATGCTG 294
||.||..|.||.||.|||||||||||.||.||||| | ||| ||||||.
BPUM_0418___d 241 ATCGTTATTTCTGCGGCAAAAGACAAAGAGACGAT-TGGCAC-CATGCTT 288
BSNT_00766___ 295 CAAAACGGAG--CGATTGACTATATCTTAAAGCCGTTTAAGCTTGAGCGA 342
|||||.||.| ||| ||.||||||.|.|||||.||||||.|.||.||.
BPUM_0418___d 289 CAAAATGGTGCACGA--GATTATATCATCAAGCCATTTAAGTTCGAACGT 336
BSNT_00766___ 343 ATGAGACAGGCGCTCGAAAAGTA-CAAGCAATATAAA-CAAAAAATC--- 387
||||.|.|..|.||.||||..|| .|||| .|.|||| |.||||.||
BPUM_0418___d 337 ATGAAAGAATCACTTGAAACCTATAAAGC-GTTTAAATCTAAAATTCGCA 385
BSNT_00766___ 388 --GAAGC-GAATGATACGCTGTCCCAGGAACAGCTCGATGCGATCCT--G 432
|.||| |||| |.||.|||||...|||.||||..|||.| |
BPUM_0418___d 386 CAGCAGCAGAAT-------TTTCTCAGGAGATGCTGGATGATATCATACG 428
BSNT_00766___ 433 AATATTCCGCAGCAGGCCGT---ACAGGA---------TCTGCCGAAAGG 470
|| |||.|||.|| .||||| .||.||.||.||
BPUM_0418___d 429 AA--------AGCCGGCTGTTAAGCAGGAAGATACTTGGCTTCCTAAGGG 470
BSNT_00766___ 471 GTTGAAT---CACTTCACGATGAATGAAGTCACTGCTTTT------TTGA 511
|.||||| || .||||||||||||.|.|..||.|.| |||
BPUM_0418___d 471 GCTGAATGTGCA---TACGATGAATGAAATTAAAGCCTATATGGGCTTG- 516
BSNT_00766___ 512 AACAGCAA--ACCGCATCCCTTTCTGCTGAAGAGGTCGCCAAGGCTCTCG 559
|||.|| |||||| .|||||.||.||.||.|||||.||.||.|
BPUM_0418___d 517 --CAGGAAGGACCGCA-----GTCTGCGGAGGAAGTGGCCAATGCACTTG 559
BSNT_00766___ 560 GCATCGCCAGAGTGACAGCCAGACGATATCTTGATTACTTA--GAAAAAA 607
||||.||..|.||.||.||..|.||.|||.|.||.|.|||| ||||.||
BPUM_0418___d 560 GCATTGCACGTGTCACGGCACGCCGGTATTTAGACTTCTTAGTGAAAGAA 609
BSNT_00766___ 608 CCGG-GATCATCAAATTGGACGTTCAATACGGCGGAGTCGGCCGGCCGGT 656
|| ||.| |.|||||.||..|.||||||||||||||.||.|||||.||
BPUM_0418___d 610 --GGCGAGC-TGAAATTAGATATGCAATACGGCGGAGTTGGGCGGCCTGT 656
BSNT_00766___ 657 CAACCGCTACGTGTTAAAAGGATAA---------------- 681
.|| |||| .|||.
BPUM_0418___d 657 GAA-----------TAAA--TATATCGTACATTCTGACTAA 684
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