Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00757 and BPUM_0415
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:31
# Commandline: needle
# -asequence dna-align/BSNT_00757___ydbA.1.24716.seq
# -bsequence dna-align/BPUM_0415___ydbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00757___ydbA-BPUM_0415___ydbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00757___ydbA-BPUM_0415___ydbA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00757___ydbA
# 2: BPUM_0415___ydbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity: 586/890 (65.8%)
# Similarity: 586/890 (65.8%)
# Gaps: 130/890 (14.6%)
# Score: 1841.0
#
#
#=======================================
BSNT_00757___ 1 GTGCCAACAGAACGAAAAGAAGA----CTTACATCAGCAATTAAAAGAGA 46
|..|| |.|||| ||| ||.|.|.|| |||||||||||.|
BPUM_0415___y 1 ------ATGGA--GGAAAG-AGAGTGGCTAAAAGCA-CAATTAAAAGAAA 40
BSNT_00757___ 47 TAGAGAAATGGGAAAAAGATCAGCAAAAAGTCTGGTTTTGGGAAAAGCTC 96
|.||.||.|||||.|||||.||||||||.||.|||||||||||.||.|||
BPUM_0415___y 41 TTGAAAAGTGGGAGAAAGACCAGCAAAAGGTATGGTTTTGGGAGAAACTC 90
BSNT_00757___ 97 AGCCGTCTCCCGTTTCAGCTGCTGGACAAGCTGACACCGGAATTCATCCA 146
||||||.|.||.|||||..||||||||||||||||.||.|..||.|||||
BPUM_0415___y 91 AGCCGTTTGCCATTTCAAATGCTGGACAAGCTGACGCCTGCCTTTATCCA 140
BSNT_00757___ 147 GAAAAAGATCGGCAAGCTCTTGGATGAGGTCGG------CAGCTTTGTTC 190
||||||.|||||...|||..|.|||||..|.|| || |||
BPUM_0415___y 141 GAAAAAAATCGGTGTGCTGCTAGATGAAATGGGTCATTACA------TTC 184
BSNT_00757___ 191 AAACAGGCGGACAGTACC----TGACATCTGAAAAACAGATTATCAGGAT 236
||.|||||| ||.|| |||||||.||||||...||.||| .||
BPUM_0415___y 185 AATCAGGCG----GTGCCTATTTGACATCAGAAAAAGGCATCATC--CAT 228
BSNT_00757___ 237 --GTTTCAAAAGAAA-CTGCCGGAGGAGATCTTTGAATC------GC--- 274
.|||||||||||| .||| ||| |||.|| ||
BPUM_0415___y 229 CAATTTCAAAAGAAATGTGC------AGA----TGATTCCATTCAGCGTA 268
BSNT_00757___ 275 TGGAGGACATCCGGAAAGCGCCTCTTCCTGTCATGGATGAAATTGCGGAA 324
|.||.||.||....||||||||..||....|||||||.|..|||...|||
BPUM_0415___y 269 TAGAAGATATAGAAAAAGCGCCAATTGAAATCATGGACGCCATTAGTGAA 318
BSNT_00757___ 325 GGAATGGGCAAAAACAGAACCAA-CGCAGCAACCGTTCAAGGCGCGACAA 373
...|||||.|||||.||.||.|| |.| ||.||.||.|||||.|||||||
BPUM_0415___y 319 CATATGGGGAAAAATAGGACGAATCTC-GCCACGGTACAAGGGGCGACAA 367
BSNT_00757___ 374 CCGGTGTGGGCGGCGTGTTTACGCTGGCGGCAGACATTCCGGCAGTGCTT 423
|.|||||.||.||..|||||||.|||||.|||||.|||||.||.||.|||
BPUM_0415___y 368 CGGGTGTCGGTGGTATGTTTACACTGGCTGCAGATATTCCTGCGGTACTT 417
BSNT_00757___ 424 GGCTTATCACTAAAAACATTACAGGATATCGCAGTCGCATACGGCTATGA 473
|||.|.||.||.|||||||||||||||||.||.|||.|.||.||||||||
BPUM_0415___y 418 GGCCTCTCCCTTAAAACATTACAGGATATTGCCGTCACCTATGGCTATGA 467
BSNT_00757___ 474 CCCAAAGGAGAAAAAAGAACGCGTCTTCATTGTGAAATGCCTGCAGCTGA 523
.||.||..|.|||.||||.||.||||||||..|.||||||.|.||.||||
BPUM_0415___y 468 TCCTAAAAACAAAGAAGAGCGGGTCTTCATCATAAAATGCTTACAACTGA 517
BSNT_00757___ 524 CGTCGGCTGATGTTGTCGGCAAAAGATCGATTTTGCAGGAATTAAAACA- 572
|.||.||||||||.||.||.||.|.|||||| |||||||.|
BPUM_0415___y 518 CTTCTGCTGATGTGGTTGGGAAGAAATCGAT---------ATTAAAAGAG 558
BSNT_00757___ 573 --------CT---ACGATCAAGACCG--TACATATAAGAATGTCGCTTCT 609
|| |.|||..|||..| .||||..||..||| ||||
BPUM_0415___y 559 CTCAGAAGCTTTCATGATTCAGAAGGGAAACATGAAAACATG----TTCT 604
BSNT_00757___ 610 --CAAATCCAAGGCTGGCGAGAAGTCGTTTTGGGCTAT------CGAGAC 651
|||||||||||.|||||.||.||.|| |||| |||||.
BPUM_0415___y 605 CACAAATCCAAGGGTGGCGTGAGGTAGT------CTATAATTACCGAGAT 648
BSNT_00757___ 652 ACGTTTGGCTGGAAAAAACTTTTCCAGATGGTGCCGGTTGCCGGAATGGT 701
.|.|||||||||||.|||||.||.|||.|.||.||.||.||.||.||..|
BPUM_0415___y 649 TCATTTGGCTGGAAGAAACTATTTCAGCTTGTTCCCGTAGCAGGGATTTT 698
BSNT_00757___ 702 TTTTGGCGCCG-CTGCCAATCGCTCAACATTAAACGACATTACCGAGACA 750
.||||||||.| || ||||.||||||..|.||||....|||.||||.|||
BPUM_0415___y 699 ATTTGGCGCAGTCT-CCAACCGCTCACAACTAAAAAGTATTGCCGAAACA 747
BSNT_00757___ 751 GGCATGATGCTGTAC--AAAAAGAGGCGCATTCT-TGAACGACTGAAAGA 797
||||||||||..||| ||||.|| .|.|||.| |.|| ||.|..||||
BPUM_0415___y 748 GGCATGATGCAATACCGAAAACGA--AGAATTGTCTCAA-GATTAGAAGA 794
BSNT_00757___ 798 AA---------CAGAAC-GAGAGA---TGG-----AATAG 819
.| .||||| |||.|| ||| ||
BPUM_0415___y 795 GATCACCCAGCAAGAACAGAGTGAATCTGGTGCATAA--- 831
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