Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00757 and BPUM_0415

See Amino acid alignment / Visit BSNT_00757 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:31
# Commandline: needle
#    -asequence dna-align/BSNT_00757___ydbA.1.24716.seq
#    -bsequence dna-align/BPUM_0415___ydbA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00757___ydbA-BPUM_0415___ydbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00757___ydbA-BPUM_0415___ydbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00757___ydbA
# 2: BPUM_0415___ydbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     586/890 (65.8%)
# Similarity:   586/890 (65.8%)
# Gaps:         130/890 (14.6%)
# Score: 1841.0
# 
#
#=======================================

BSNT_00757___      1 GTGCCAACAGAACGAAAAGAAGA----CTTACATCAGCAATTAAAAGAGA     46
                           |..||  |.|||| |||    ||.|.|.|| |||||||||||.|
BPUM_0415___y      1 ------ATGGA--GGAAAG-AGAGTGGCTAAAAGCA-CAATTAAAAGAAA     40

BSNT_00757___     47 TAGAGAAATGGGAAAAAGATCAGCAAAAAGTCTGGTTTTGGGAAAAGCTC     96
                     |.||.||.|||||.|||||.||||||||.||.|||||||||||.||.|||
BPUM_0415___y     41 TTGAAAAGTGGGAGAAAGACCAGCAAAAGGTATGGTTTTGGGAGAAACTC     90

BSNT_00757___     97 AGCCGTCTCCCGTTTCAGCTGCTGGACAAGCTGACACCGGAATTCATCCA    146
                     ||||||.|.||.|||||..||||||||||||||||.||.|..||.|||||
BPUM_0415___y     91 AGCCGTTTGCCATTTCAAATGCTGGACAAGCTGACGCCTGCCTTTATCCA    140

BSNT_00757___    147 GAAAAAGATCGGCAAGCTCTTGGATGAGGTCGG------CAGCTTTGTTC    190
                     ||||||.|||||...|||..|.|||||..|.||      ||      |||
BPUM_0415___y    141 GAAAAAAATCGGTGTGCTGCTAGATGAAATGGGTCATTACA------TTC    184

BSNT_00757___    191 AAACAGGCGGACAGTACC----TGACATCTGAAAAACAGATTATCAGGAT    236
                     ||.||||||    ||.||    |||||||.||||||...||.|||  .||
BPUM_0415___y    185 AATCAGGCG----GTGCCTATTTGACATCAGAAAAAGGCATCATC--CAT    228

BSNT_00757___    237 --GTTTCAAAAGAAA-CTGCCGGAGGAGATCTTTGAATC------GC---    274
                       .|||||||||||| .|||      |||    |||.||      ||   
BPUM_0415___y    229 CAATTTCAAAAGAAATGTGC------AGA----TGATTCCATTCAGCGTA    268

BSNT_00757___    275 TGGAGGACATCCGGAAAGCGCCTCTTCCTGTCATGGATGAAATTGCGGAA    324
                     |.||.||.||....||||||||..||....|||||||.|..|||...|||
BPUM_0415___y    269 TAGAAGATATAGAAAAAGCGCCAATTGAAATCATGGACGCCATTAGTGAA    318

BSNT_00757___    325 GGAATGGGCAAAAACAGAACCAA-CGCAGCAACCGTTCAAGGCGCGACAA    373
                     ...|||||.|||||.||.||.|| |.| ||.||.||.|||||.|||||||
BPUM_0415___y    319 CATATGGGGAAAAATAGGACGAATCTC-GCCACGGTACAAGGGGCGACAA    367

BSNT_00757___    374 CCGGTGTGGGCGGCGTGTTTACGCTGGCGGCAGACATTCCGGCAGTGCTT    423
                     |.|||||.||.||..|||||||.|||||.|||||.|||||.||.||.|||
BPUM_0415___y    368 CGGGTGTCGGTGGTATGTTTACACTGGCTGCAGATATTCCTGCGGTACTT    417

BSNT_00757___    424 GGCTTATCACTAAAAACATTACAGGATATCGCAGTCGCATACGGCTATGA    473
                     |||.|.||.||.|||||||||||||||||.||.|||.|.||.||||||||
BPUM_0415___y    418 GGCCTCTCCCTTAAAACATTACAGGATATTGCCGTCACCTATGGCTATGA    467

BSNT_00757___    474 CCCAAAGGAGAAAAAAGAACGCGTCTTCATTGTGAAATGCCTGCAGCTGA    523
                     .||.||..|.|||.||||.||.||||||||..|.||||||.|.||.||||
BPUM_0415___y    468 TCCTAAAAACAAAGAAGAGCGGGTCTTCATCATAAAATGCTTACAACTGA    517

BSNT_00757___    524 CGTCGGCTGATGTTGTCGGCAAAAGATCGATTTTGCAGGAATTAAAACA-    572
                     |.||.||||||||.||.||.||.|.||||||         |||||||.| 
BPUM_0415___y    518 CTTCTGCTGATGTGGTTGGGAAGAAATCGAT---------ATTAAAAGAG    558

BSNT_00757___    573 --------CT---ACGATCAAGACCG--TACATATAAGAATGTCGCTTCT    609
                             ||   |.|||..|||..|  .||||..||..|||    ||||
BPUM_0415___y    559 CTCAGAAGCTTTCATGATTCAGAAGGGAAACATGAAAACATG----TTCT    604

BSNT_00757___    610 --CAAATCCAAGGCTGGCGAGAAGTCGTTTTGGGCTAT------CGAGAC    651
                       |||||||||||.|||||.||.||.||      ||||      |||||.
BPUM_0415___y    605 CACAAATCCAAGGGTGGCGTGAGGTAGT------CTATAATTACCGAGAT    648

BSNT_00757___    652 ACGTTTGGCTGGAAAAAACTTTTCCAGATGGTGCCGGTTGCCGGAATGGT    701
                     .|.|||||||||||.|||||.||.|||.|.||.||.||.||.||.||..|
BPUM_0415___y    649 TCATTTGGCTGGAAGAAACTATTTCAGCTTGTTCCCGTAGCAGGGATTTT    698

BSNT_00757___    702 TTTTGGCGCCG-CTGCCAATCGCTCAACATTAAACGACATTACCGAGACA    750
                     .||||||||.| || ||||.||||||..|.||||....|||.||||.|||
BPUM_0415___y    699 ATTTGGCGCAGTCT-CCAACCGCTCACAACTAAAAAGTATTGCCGAAACA    747

BSNT_00757___    751 GGCATGATGCTGTAC--AAAAAGAGGCGCATTCT-TGAACGACTGAAAGA    797
                     ||||||||||..|||  ||||.||  .|.|||.| |.|| ||.|..||||
BPUM_0415___y    748 GGCATGATGCAATACCGAAAACGA--AGAATTGTCTCAA-GATTAGAAGA    794

BSNT_00757___    798 AA---------CAGAAC-GAGAGA---TGG-----AATAG    819
                     .|         .||||| |||.||   |||     ||   
BPUM_0415___y    795 GATCACCCAGCAAGAACAGAGTGAATCTGGTGCATAA---    831


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