Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00741 and BPUM_0400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:31
# Commandline: needle
# -asequence dna-align/BSNT_00741___topB.1.24716.seq
# -bsequence dna-align/BPUM_0400___topB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00741___topB-BPUM_0400___topB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00741___topB-BPUM_0400___topB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00741___topB
# 2: BPUM_0400___topB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2263
# Identity: 1621/2263 (71.6%)
# Similarity: 1621/2263 (71.6%)
# Gaps: 155/2263 ( 6.8%)
# Score: 5500.0
#
#
#=======================================
BSNT_00741___ 1 ATGTCAAAAACAGTTGTATTAGCTGAAAAACCTTCAGTCGGCAGGGATTT 50
.||||||||||||||||||||||.||.||||||||.|||||..|.|||.|
BPUM_0400___t 1 GTGTCAAAAACAGTTGTATTAGCAGAGAAACCTTCGGTCGGACGTGATCT 50
BSNT_00741___ 51 AGCCCGGGTGCTGAAGTGCCATAAAAAAGGAAACGGTTATCTCGAAGGCG 100
.||.||.|||||||||||.||||||||||||||.||.|.|.|.|||||.|
BPUM_0400___t 51 TGCACGTGTGCTGAAGTGTCATAAAAAAGGAAATGGCTTTTTAGAAGGAG 100
BSNT_00741___ 101 ATCAATATATTGTGACCTGGGCTTTAGGCCATTTGGTGACGCTTGCTGAT 150
|||||||.||||||||.|||||..|.|||||||||||.||.||.||||||
BPUM_0400___t 101 ATCAATACATTGTGACATGGGCGCTTGGCCATTTGGTCACACTGGCTGAT 150
BSNT_00741___ 151 CCGGAAGGCTACGGAAAAGAATTTCAATCATGGCGCCTAGAGGATCTGCC 200
||.||||||||||||||||||||||||||.|||||..||||||||.|.||
BPUM_0400___t 151 CCAGAAGGCTACGGAAAAGAATTTCAATCCTGGCGTTTAGAGGATTTACC 200
BSNT_00741___ 201 GATTATCCCAGAACCCTTGAAGCTTGTGGTGATAAAAAAAAC-CGGAAAG 249
.||.||.||.|||||..||||.|||||||||||.||.||.|| .|||||.
BPUM_0400___t 201 AATCATTCCTGAACCGCTGAAACTTGTGGTGATGAAGAAGACAGGGAAAC 250
BSNT_00741___ 250 CAGTTCAATGCAGTCAAATCCCAGCTTACCCGTAAAGACGTCAATCAGAT 299
.|.||||| |||||.|||.|.||||||.|..|.|||||.|||||..|.||
BPUM_0400___t 251 AATTTCAA-GCAGTGAAAGCACAGCTTGCGAGAAAAGATGTCAAAGACAT 299
BSNT_00741___ 300 TGTCATCGCGACTGACGCAGGCCGGGAAGGTGAGCTTGTTGCGCGCTGGA 349
|||||||||.||.||.||.||.||.|||||.||||||||.||.||.||||
BPUM_0400___t 300 TGTCATCGCAACAGATGCTGGACGTGAAGGAGAGCTTGTCGCACGATGGA 349
BSNT_00741___ 350 TCATTGAGAAAGCGAATGTCCGAAAA--CCAATCAAGCGGCTGTGGATTT 397
|..||||.|||||..|||| ||||| ||..|.||.||.||.|||||||
BPUM_0400___t 350 TTCTTGAAAAAGCCCATGT--GAAAAAGCCTTTAAAACGACTATGGATTT 397
BSNT_00741___ 398 CATCTGTGACGGATAAAGCGA-TCAAGGAAGGTT-------TTCAAAAGC 439
|||||||.|||||.|||||.| |||| |||||.| ||.|||||
BPUM_0400___t 398 CATCTGTCACGGACAAAGCCATTCAA-GAAGGCTTCAAACGTTTAAAAG- 445
BSNT_00741___ 440 TGCGCAGCGGCAAAGAATATGAAAACCTTTACCATTCTGCCGTCGCCAGA 489
.|||||||||||||||.|||.|.||.|..||.|||||.||..|.
BPUM_0400___t 446 ------ACGGCAAAGAATATGATAACTTGTATCGCTCAGCCGTTGCGCGC 489
BSNT_00741___ 490 GCGGAAGCGGATTGGATTGTGGGGATCAATGCCACCCGTGCACTTACCAC 539
||.||.||.||.||||||||.||.|||||.||.||..|.||.||.||.||
BPUM_0400___t 490 GCAGAGGCAGACTGGATTGTCGGCATCAACGCAACAAGAGCGCTGACAAC 539
BSNT_00741___ 540 AAAATTCAATGCCCAGCTCTCATGCGGGCGTGTGCAGACTCCGACGCTTG 589
.|||||||||||.|||||.||.||.||.||.|||||.||.||.|||.|.|
BPUM_0400___t 540 CAAATTCAATGCACAGCTTTCCTGTGGACGGGTGCAAACACCAACGATCG 589
BSNT_00741___ 590 CCATGAT-TGCAAAGCGCGAGGCAGACATTCAAGC-GTTTACGC-----C 632
||||||| |.|||| ||.||.|.|||||||| ||| .|||..|| |
BPUM_0400___t 590 CCATGATATTCAAA-CGAGAAGAAGACATTC-AGCAATTTCAGCCGAAGC 637
BSNT_00741___ 633 CGTTCCGTATTACGGCATCCGTG-CTG---TAGTCGACGGCATGACGCTG 678
||||| ||| |.|| || ||| .|||.||.||..|.|||.||
BPUM_0400___t 638 CGTTC--TAT----GGAT---TGACTGCACAAGTAGATGGACTAACGTTG 678
BSNT_00741___ 679 ACGTGGCAGGATAAGAAATCAAAGCAGACGAGAACGTTCAATCAAG---A 725
||.|||||||||...|||.|||||||.|...|.||.||| |||| |
BPUM_0400___t 679 ACCTGGCAGGATGCCAAAACAAAGCAAAACCGGACATTC---CAAGAGAA 725
BSNT_00741___ 726 TGT-AACAA----------GCCGTCTGCTAAAAAATCTCCAAGGAAAGCA 764
||| |.||| ||.|.||| |.||||.||.|.
BPUM_0400___t 726 TGTGATCAAAGAGCGTTTGGCAGCCTG-----------CAAAGGCAAACC 764
BSNT_00741___ 765 AGCGGTCGTAGCTGAGCTGAAAAAAACAGCGAAAAAAAGC-TTTGCGCCT 813
|||.||.||.|.||.|.|||||||||||||| |||||||| ||.|||||.
BPUM_0400___t 765 AGCAGTGGTTGATGCGTTGAAAAAAACAGCG-AAAAAAGCGTTCGCGCCG 813
BSNT_00741___ 814 GCGCTTTATGATTTAACGGAGCTGCAGCGTGACGCCCACAAGCGCTTCGG 863
|..||.||.|||.|.||.||..||||||||||.||.||.||.||||..||
BPUM_0400___t 814 GGACTGTACGATCTGACTGAATTGCAGCGTGATGCACATAAACGCTATGG 863
BSNT_00741___ 864 TTTTTCTGCTAAAGAAACGCTTTCTGTCCTGCAGAAGCTATATGAGCAGC 913
.||.||.||.||||||||..|.|||...||.|||....|.||||||||||
BPUM_0400___t 864 CTTCTCAGCCAAAGAAACATTATCTACGCTTCAGCGATTGTATGAGCAGC 913
BSNT_00741___ 914 ATAAGCTCGTCACATATCCGCGGACGGACTCTAGATTTTTATCCAG-TGA 962
||||||||||||||||||||||.||.||.||..|||||.| |.||| .||
BPUM_0400___t 914 ATAAGCTCGTCACATATCCGCGTACAGATTCACGATTTAT-TTCAGCGGA 962
BSNT_00741___ 963 CATCATCCCAACGTTAAAAGACCGTCTGGAAGGCATGGAAGTAAAACCGT 1012
.|||.|.||.||.||||||||.|||.|..||||.|||.|.||.|.|||||
BPUM_0400___t 963 TATCGTTCCTACATTAAAAGATCGTTTAAAAGGAATGAACGTCAGACCGT 1012
BSNT_00741___ 1013 ATGCCCAATATGTCAGCCAAATTAAAAAACGCGGCA----TTAAATCTCA 1058
||||.||..||||.|.||..|||..|.| |.|| |.|||.|.||
BPUM_0400___t 1013 ATGCGCAGCATGTGAACCGGATTTTACA----GTCAGGTGTAAAAGCGCA 1058
BSNT_00741___ 1059 TAAAGGATATGTCAATGACGCGAAGGTGTCAGACCACCACGCGATTATCC 1108
.|||||.|..||||||||.||.||.||||||||.|||||.|||||.||.|
BPUM_0400___t 1059 CAAAGGCTTCGTCAATGATGCCAAAGTGTCAGATCACCATGCGATCATTC 1108
BSNT_00741___ 1109 CGACCGAAGAGCCGCTCGTTCTCAGCAGT-CTGAGTGATAAAGAACGAAA 1157
|.|||||.||...|||...|| |||.||| ||.||.||||||||.||.||
BPUM_0400___t 1109 CAACCGAGGAAGAGCTATATC-CAGGAGTACTAAGCGATAAAGAGCGTAA 1157
BSNT_00741___ 1158 GCTGTATGACCTGATTGCGAAACGTTTCCTTGCTGTATTAATGCCTGCAT 1207
..|.||||||||.|||||.|||||.||||||||||||.|.|||..|.|.|
BPUM_0400___t 1158 ATTATATGACCTCATTGCCAAACGATTCCTTGCTGTACTCATGAATCCTT 1207
BSNT_00741___ 1208 TCGAATATGAGGAAACAAAGGTCATCGCAGAAATCGGCGGAGAAACCTTT 1257
||||.|||||.|||||||.|||||||.|..||||.|||.|.|||||.||.
BPUM_0400___t 1208 TCGAGTATGAAGAAACAACGGTCATCACCAAAATAGGCAGTGAAACATTC 1257
BSNT_00741___ 1258 AGGGCGAAAGGCAAAACCGTGCAATCGCA--AGGGTGGAAAGCCGTTTAT 1305
|..||.|||||.|||||.|||||| ||| .||.|||||||||||.||.
BPUM_0400___t 1258 ACAGCAAAAGGGAAAACTGTGCAA--GCAGCTGGCTGGAAAGCCGTGTAC 1305
BSNT_00741___ 1306 GATATGGCGGATGAGGATGATG-AGCAG--GAGGATGACAGAGACCAGAC 1352
|||....||.||||.||.||.| |.||| |||| .|||.|| ||
BPUM_0400___t 1306 GATGACTCGTATGAAGAAGAGGAATCAGCCGAGG------CAGATCA-AC 1348
BSNT_00741___ 1353 ACTTCCTGC-GCTTCAAAAAGGCGACA--CACTTGCCGTCCGCAC-GTTA 1398
|.||.|.|| ||||..|.||| |||| ||||.|.|||.|| || |.|.
BPUM_0400___t 1349 ATTTGCCGCTGCTTTCAGAAG--GACAGTCACTAGACGTACG-ACAGCTG 1395
BSNT_00741___ 1399 ACGGAAACAAGCGGCCAAACGAAGCCGCCTGCCCGCTTTAATGAAGGGAC 1448
|..||||||||.||..|||||||.||.|||||.||.||||||||||.|||
BPUM_0400___t 1396 AAAGAAACAAGAGGAGAAACGAAACCTCCTGCACGTTTTAATGAAGCGAC 1445
BSNT_00741___ 1449 CTTGCTATCAGCGATGGAAAACCCAAGC-GCGTTTATGCAGGGAGAAGAA 1497
|||..||||.||.||||||||||| ||| ||.|||||||||...||.|||
BPUM_0400___t 1446 CTTATTATCTGCTATGGAAAACCC-AGCGGCATTTATGCAGAACGAGGAA 1494
BSNT_00741___ 1498 AAAGGCCTCGTCAAAACGCTTGGAGAAACAGGCGGCCTCGGCACGGTGGC 1547
||.|.|.|.||.|||||.|||||.||||||||.||.||.||.||.||.||
BPUM_0400___t 1495 AAGGACTTAGTGAAAACCCTTGGTGAAACAGGTGGTCTAGGAACAGTAGC 1544
BSNT_00741___ 1548 AACGCGTGCCGACATTATTGAAAAACTGTTCAACAGCTTTTTAATCGAGA 1597
|||..|.||.||.|||||||||||.||||||||.|||||.||||||||||
BPUM_0400___t 1545 AACAAGAGCGGATATTATTGAAAAGCTGTTCAATAGCTTCTTAATCGAGA 1594
BSNT_00741___ 1598 AAAAAGGCCAAGATATTTTTATCACATCTAAAGGAAAACAGCTCCTGCAG 1647
||||.|||.||||.|||||.|||||.||.||||||||.|||.|.||
BPUM_0400___t 1595 AAAAGGGCAAAGACATTTTCATCACCTCGAAAGGAAAGCAGTTGCT---- 1640
BSNT_00741___ 1648 CTTGTT----CCGGAGGATCTGAAA-TCACCGGCCTTAACAGCAGAATGG 1692
||.||| ||.||||| ||.||| ||.||.||.|||||||||||||||
BPUM_0400___t 1641 CTCGTTAGTGCCTGAGGA-CTTAAAGTCTCCTGCTTTAACAGCAGAATGG 1689
BSNT_00741___ 1693 GAGCAAAAGCTGTCTGCAATCGCTGCCGGCAAATTGAAATCGGCTGTT-- 1740
|||||||||||.|||..||||||....||..||||||| ||||..|
BPUM_0400___t 1690 GAGCAAAAGCTTTCTAAAATCGCCAAAGGACAATTGAA---GGCTTCTCA 1736
BSNT_00741___ 1741 -TTTATTAAAGATATGAAGGCTTACGCTCACCAAACGGTAAAAGAAATCA 1789
||.||.|..||.|||||..|.||.||..|.|||.|.|||...|||||||
BPUM_0400___t 1737 ATTCATGAGTGAAATGAAATCGTATGCCAAACAAGCCGTATCTGAAATCA 1786
BSNT_00741___ 1790 AAAACAGCAGCCAAACCTTCCGACATGACAACATTACGGGAACGGCA-TG 1838
||.|.|..|.|||.|||||....|||||.||..|.||.||.|| .|| ||
BPUM_0400___t 1787 AACAGACGAACCAGACCTTTAAGCATGATAATGTCACTGGTAC-CCATTG 1835
BSNT_00741___ 1839 TCCGGAATGCGGCAAAATGATGCTGAAAGTAAACGGCAAACGCGGTACGA 1888
|||.||.|||||.|||.|.|||||||||||.||.||.||||..||.||.|
BPUM_0400___t 1836 TCCAGACTGCGGTAAACTCATGCTGAAAGTGAATGGAAAACATGGCACAA 1885
BSNT_00741___ 1889 TGCTCGTGTGCCAAGATCGTGAATGCGG-AAGCAGAAAAACGATTGCCCG 1937
||||.||.||.||.||..|.|||||||| .|.|..|||||.| ||.|..
BPUM_0400___t 1886 TGCTTGTCTGTCAGGACAGGGAATGCGGCCATCGTAAAAATG--TGGCAA 1933
BSNT_00741___ 1938 A-AAAACAAACGCACGCTGCCCGAACTGCCATAAACGAA--TGGAGCTTC 1984
| ||||||||||||||||||||.|||||.|||||| || |.|||||.|
BPUM_0400___t 1934 AGAAAACAAACGCACGCTGCCCAAACTGTCATAAA--AAGCTCGAGCTGC 1981
BSNT_00741___ 1985 GCGGCCAAGGCGAGGGCCAAACCTTTGCGTGTGTGTGCGGTCACCGTGAA 2034
||||..|||||||.|||.|||.||||||.|||||.|||||.||..|.|||
BPUM_0400___t 1982 GCGGAGAAGGCGATGGCAAAATCTTTGCTTGTGTATGCGGCCATAGAGAA 2031
BSNT_00741___ 2035 AAGCTCTCTGTATTTGAAAAACGAAA----------AAACAAAGACAAAG 2074
|||||.|||||.||.||||||||.|| ||.|||| |.||||
BPUM_0400___t 2032 AAGCTGTCTGTCTTCGAAAAACGCAAATCTCAATCCAATCAAA-AGAAAG 2080
BSNT_00741___ 2075 CGCGTGCTACCAAACGGGACGTATCCTCTTATATGAAAAAACAAAATAAA 2124
|..|| ||.|..||.||.||....||||||||.||||||||.|||
BPUM_0400___t 2081 CCAGT------AAGCACGATGTGTCTAAATATATGAAGAAACAAAAGAAA 2124
BSNT_00741___ 2125 ---GATGAGCCGATTAACAACGCGCTGGCAGAACAGCTGAAAAAACTCGG 2171
||.||.||.|||||.|||||.||.||.|||||..|.||.|||.|...
BPUM_0400___t 2125 GTGGAAGAACCCATTAATAACGCACTTGCTGAACAATTAAAGAAATTAAA 2174
BSNT_00741___ 2172 TTTGGATAAATAA 2184
.||.|||.||||.
BPUM_0400___t 2175 ATTAGATCAATAG 2187
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