Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00983 and BPUM_0397
See
Amino acid alignment /
Visit
BSNT_00983 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00983___ydhC.1.24716.seq
# -bsequence dna-align/BPUM_0397___ydhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00983___ydhC-BPUM_0397___ydhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00983___ydhC-BPUM_0397___ydhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00983___ydhC
# 2: BPUM_0397___ydhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity: 433/766 (56.5%)
# Similarity: 433/766 (56.5%)
# Gaps: 182/766 (23.8%)
# Score: 1061.5
#
#
#=======================================
BSNT_00983___ 1 ATGGACGATTTTAAATT------AGAT---AAG-CCGACTCCCTACTACC 40
||| |||| |||| ||| ||..|.||.|||.|..
BPUM_0397___y 1 ATG----------AATTCATTCGAGATGGAAAGACCAGCACCATACCATA 40
BSNT_00983___ 41 TGCAATTTTATAACCAGCTAAAAAAAATGATCTTCAACGGGAC-TTTTAA 89
|||||||||||.|.|||.|.||..|.|||||.||..| .|||| .|||.|
BPUM_0397___y 41 TGCAATTTTATGAACAGTTGAAGCAGATGATTTTTGA-TGGACAGTTTCA 89
BSNT_00983___ 90 GCCTGGGGAACGGATAAATGAAACACAGCTGGCGAAAAGCTTTGGCGTCA 139
|||.||||||||.||.|||||.||||||||.||.|||...|||||.||.|
BPUM_0397___y 90 GCCAGGGGAACGCATCAATGAGACACAGCTTGCCAAACAATTTGGTGTAA 139
BSNT_00983___ 140 GCCGCTCTCCGATAAGGGAAGCCATGCGATTGCTT---GAGAAAGATGGT 186
||||.||.|||.|.||.||.||.|||.| |||| ||.|||||||..
BPUM_0397___y 140 GCCGATCACCGGTGAGAGAGGCGATGAG---GCTTTTAGAAAAAGATGAG 186
BSNT_00983___ 187 TTGTTAAAAGCGGATGACCGAAATGGGTTTTCGATCACG----------- 225
.|.||.|..||.|||.| |||.|||.|
BPUM_0397___y 187 CTCTTGATCGCTGATCA-------------TCGGTCAGGCTACTCTATTT 223
BSNT_00983___ 226 --TCGTTAACGGCAAAAGATGTAGATGAGATTTATAAAATCAGAATTCCG 273
.|||||.|||.|.|||||||.||.|||.|||||.||||..|||||.|.
BPUM_0397___y 224 ATACGTTATCGGAAGAAGATGTCGAGGAGCTTTATCAAATTCGAATTGCC 273
BSNT_00983___ 274 CTGGAGCAGCTGGCAGTCGAATTAGTCATAG--ACGAAGCGGACG-AAGA 320
.|.||...|||.||.||.||..|.| ||| | |.|||||.| || ||.|
BPUM_0397___y 274 TTAGAAACGCTTGCTGTTGAGCTTG-CAT-GCAAAGAAGCCG-CGCAAAA 320
BSNT_00983___ 321 AGAGC----------TGACCA--TACT------------CGAA------A 340
||||| |||.|| |.|| |||| |
BPUM_0397___y 321 AGAGCTCGATGAAATTGAGCAGGTCCTCACGCAGGCAGACGAAGCAATCA 370
BSNT_00983___ 341 AACAGCTTGAAGAAACAGAGAAAGCCATTCGCAACGGCACGGAAGATACG 390
|||||| ||..|.||...||||.||| ||.| .||.|||
BPUM_0397___y 371 AACAGC---AACTACCATCTAAAGACAT------CGTC----CAGTTAC- 406
BSNT_00983___ 391 GAAATCATTCGTTTAAACCAAAAATTTCATGAGCTGCTGGTTGATTT--- 437
||.|..|.|||.|.|.||||| |||| |||
BPUM_0397___y 407 ---ATGAAGCCTTTCATCAAAAAA--TCAT--------------TTTAGC 437
BSNT_00983___ 438 CAGCCATAA-CAGAC-----ATTTGAAAAATTTGCTTG-AGCATGTAAAT 480
.|||||.|| | || ||.|.||.|| ||| |.|||||.||.
BPUM_0397___y 438 GAGCCACAATC--ACCGCTTATATAAACAA-----TTGAATCATGTGAAC 480
BSNT_00983___ 481 GACCTGATTCATTTTTGCAGAATTCTTAATTATACCGGCGACCACCGCGC 530
|..|||||||||||||||.|.||..||.|||.||.|||||.....||.||
BPUM_0397___y 481 GCACTGATTCATTTTTGCCGTATCTTTCATTTTAGCGGCGGGGCGCGTGC 530
BSNT_00983___ 531 AGAAACGAT----ACTGCGTGAGCA--CCGCAGGATATT-TGAAGAAGTG 573
.||.||||| || |||||| |.||....|||| ||
BPUM_0397___y 531 TGAGACGATTCAAAC----TGAGCATGCTGCCATTTATTCTG-------- 568
BSNT_00983___ 574 AAAAAGAAAAA---------CAAAGAAGCAG-CCAAACAACATGTGCTGG 613
|||.||||.| ||.||||||.| .|||.|.| ||..|.
BPUM_0397___y 569 -AAATGAAAGAGCGCCGCTCCACAGAAGCCGTTCAAGCGA----TGACGA 613
BSNT_00983___ 614 CTCATTTCAATCATGACTGTGA-GCATTTGAAGCATGTGCT---TGAAGA 659
.||||||....||||| ||||| |||.||.|||||.||.|| ||||..
BPUM_0397___y 614 ATCATTTGTTACATGA-TGTGATGCACTTAAAGCAAGTACTCTCTGAAAC 662
BSNT_00983___ 660 AGGTAAAGAGAATTGA 675
| ||..||.|||.|
BPUM_0397___y 663 A---AACAAGGATTAA 675
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.