Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00739 and BPUM_0396

See Amino acid alignment / Visit BSNT_00739 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:30
# Commandline: needle
#    -asequence dna-align/BSNT_00739___ydzA.1.24716.seq
#    -bsequence dna-align/BPUM_0396___ydzA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00739___ydzA-BPUM_0396___ydzA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00739___ydzA-BPUM_0396___ydzA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00739___ydzA
# 2: BPUM_0396___ydzA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 324
# Identity:     196/324 (60.5%)
# Similarity:   196/324 (60.5%)
# Gaps:          60/324 (18.5%)
# Score: 545.0
# 
#
#=======================================

BSNT_00739___      1 ATGC-TGCAA-----ACGCCGATCGGAAGACTTCGCAC-GATGGGTTTTA     43
                     |||| |.|||     | |||        |.||||| || |..||||||||
BPUM_0396___y      1 ATGCATACAAGTATTA-GCC--------GTCTTCG-ACAGGCGGGTTTTA     40

BSNT_00739___     44 TTGAAGGAATGTCACTCTTAATCCTGTTGTTCATCGCTATGCCGCTTAAA     93
                     ||||.||.|||||.||.||||.|||..|.||.||.||.|||||.||.|||
BPUM_0396___y     41 TTGAGGGTATGTCTCTTTTAACCCTTCTTTTAATTGCCATGCCTCTGAAA     90

BSNT_00739___     94 TATTGGGCAGGCCTTCCGCTTGCGGTGACAATTGTCGGTTCGGTTCACGG    143
                     ||||..||.|...|||||.|.||.||.||.|||||.||.||..||||.||
BPUM_0396___y     91 TATTTTGCGGATATTCCGATGGCAGTCACCATTGTAGGCTCTCTTCATGG    140

BSNT_00739___    144 CGGGTTGTTCATTTTGTATTTACTTGTCTTGGCTTATGCAACCTTCTCTG    193
                     ||..|||||..|..|.|||.|.|||.|.|||||.||||..||||      
BPUM_0396___y    141 CGCATTGTTTGTCATCTATATGCTTATTTTGGCATATGTGACCT------    184

BSNT_00739___    194 TCAAA------TGGCCGCTGAAATGGTCAGCT-GCCGGCTTCGTCGCCGC    236
                     |.|||      ||||...|||||||||| |.| ||.||.||..|.||.||
BPUM_0396___y    185 TTAAAGTTCGCTGGCATTTGAAATGGTC-GATCGCTGGTTTTTTTGCGGC    233

BSNT_00739___    237 TTTCGTCCCATTCGGAAATTTTTTGTACGACCGCGGAT--TAAGG-----    279
                     ||||.|.||.|||||.||.||          |||..||  |||||     
BPUM_0396___y    234 TTTCATTCCTTTCGGCAACTT----------CGCCTATGATAAGGTGCTT    273

BSNT_00739___    280 --------AAATATAAA----TAA    291
                             ..|||.|||    |||
BPUM_0396___y    274 CGCCAGTATGATACAAAAGCTTAA    297


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