Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00734 and BPUM_0390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00734___ydaD.1.24716.seq
# -bsequence dna-align/BPUM_0390___ydaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00734___ydaD-BPUM_0390___ydaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00734___ydaD-BPUM_0390___ydaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00734___ydaD
# 2: BPUM_0390___ydaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity: 631/898 (70.3%)
# Similarity: 631/898 (70.3%)
# Gaps: 65/898 ( 7.2%)
# Score: 2105.5
#
#
#=======================================
BSNT_00734___ 1 ATGGCAAATTATCC---AA-----AAGAACTG-----CCG-GCACAAACT 36
|||| ||| |.| || ||.||.|| ||| || |||||.
BPUM_0390___y 1 ATGG---ATT-TACGTGAATATTTAACAAATGGCATTCCGCGC-CAAACA 45
BSNT_00734___ 37 CAAAGTCGCCAGCCGGGAATTGAAAGCGAAATGAATCCAAGTCCGGTGTA 86
||...||..|||||.||.|.||||||.|||||||||||....|||.|.|.
BPUM_0390___y 46 CAGGATCAGCAGCCAGGCAGTGAAAGGGAAATGAATCCTGCGCCGATCTT 95
BSNT_00734___ 87 TGAGTACGAGGAT--TATAAAGGAGCAGACAAATTAAAAGGAAAAGTAGC 134
|||..|||| || |||.||||..|.|.|||..|.|||||.|||||.||
BPUM_0390___y 96 TGAAGACGA--ATCCTATCAAGGGTCTGGCAAGCTTAAAGGGAAAGTTGC 143
BSNT_00734___ 135 TCTTATTACAGGCGGCGACAGCGGGATCGGACGCGCGGTTTCCGTCGCTT 184
..|.|||||||||||.||.||.||.||.|||||.||.||.||.||.||.|
BPUM_0390___y 144 ATTGATTACAGGCGGAGATAGTGGAATTGGACGTGCTGTATCTGTTGCCT 193
BSNT_00734___ 185 ACGCAAAGGAAGGCGCGGACA--TCGCCATTGTGTA--TAAGGATGAGCA 230
|.|||||.|||||.|| ||| |||||||.||||| ||| ||||.||
BPUM_0390___y 194 ATGCAAAAGAAGGGGC--ACATGTCGCCATCGTGTACTTAA--ATGAACA 239
BSNT_00734___ 231 TGAAGACGCTGAGGAGACGAAGAAACGTGTTGAACAAGAAGGCGTAAAAT 280
|.|.||.||..||||.||..|.||.||.||.|||||.||||||||.||||
BPUM_0390___y 240 TAATGATGCAAAGGATACACAAAAGCGCGTAGAACAGGAAGGCGTCAAAT 289
BSNT_00734___ 281 GCCTGCTGATTGCTGGTGACGTAGGTGAAGAGGAATTCTGCAATGAAGCG 330
|..|...||||||.||.||.||.|||||.||.|..||.|||.|..|||||
BPUM_0390___y 290 GTTTAACGATTGCAGGAGATGTCGGTGACGAAGCCTTTTGCGAGAAAGCG 339
BSNT_00734___ 331 GTTGGAAAAACGGTCAAGGAACTAGGCGGCCTT----------GACATCC 370
||.|.||||||.|| .||| ||||| ||.|||.
BPUM_0390___y 340 GTAGAAAAAACAGT---TGAA-------GCCTTTGGGCAATTAGATATCT 379
BSNT_00734___ 371 TTGTCAACAATGCAGGTGAACAGCATCCGAAGGAAAGCATCAAAGATATT 420
|.||.||.|||||.|.|||||||||.|||||.|||.|.||..|.||||||
BPUM_0390___y 380 TAGTGAATAATGCGGCTGAACAGCACCCGAAAGAACGGATTCAGGATATT 429
BSNT_00734___ 421 ACGAGCGAACAGCTTCACCGCACATTCAAAACAAATTTTTATTCTCAATT 470
.|.||.|||||||||||||..||.||.|.|||.||.||.|||||..|.||
BPUM_0390___y 430 TCTAGTGAACAGCTTCACCAAACGTTTAGAACCAACTTCTATTCCTATTT 479
BSNT_00734___ 471 TTATTTGACTAAAAAAGCAATTGATTACCTGAAACCGGGCAGCGCCATCA 520
||||||.||.||.||||||.|.||||||.|.||||||||.||..|.||.|
BPUM_0390___y 480 TTATTTTACGAAGAAAGCACTGGATTACTTAAAACCGGGAAGTTCAATTA 529
BSNT_00734___ 521 TCAATACGACATCCATCAACCCGTA-CGTAGGGAACCCGACA---CTGAT 566
|.|||||.||||||||.|||||.|| || |||.||| |.| |||||
BPUM_0390___y 530 TTAATACAACATCCATTAACCCATATCG-AGGCAAC---AAAGTGCTGAT 575
BSNT_00734___ 567 TGATTATACAGCGACAAAAGGGGCGATCAATGCCTTTACAAGAACAATGG 616
|||||||||.||||||||||||||.|||||.|.||||||..|..|.||||
BPUM_0390___y 576 TGATTATACGGCGACAAAAGGGGCCATCAACGGCTTTACGCGTTCTATGG 625
BSNT_00734___ 617 CGCAGGCGCTTGTCAAAGACGGCATCCGTGTAAATGCAGTCGCGCCGGGT 666
|.||..|||||||.|||||.||.||.||.||.||.|.|||.||||||||.
BPUM_0390___y 626 CACAATCGCTTGTGAAAGATGGAATTCGGGTGAACGGAGTAGCGCCGGGC 675
BSNT_00734___ 667 CCAATTTGGACGCCACTAATCCCAGCTACGTTCCCTGAAGAAACAGTTGC 716
||.|||||||||||.||.||.|||.||||.||...|||.||.|..||.|
BPUM_0390___y 676 CCGATTTGGACGCCGCTCATTCCATCTACATTTGATGAGGATAGTGTGG- 724
BSNT_00734___ 717 TCAA---TTTGGGCAAGATACGCCGATGGGCCGTCCTGGACAGCCTGTTG 763
|| ||.|||..|||.||.||||||||..|.||.|||||||||||.|
BPUM_0390___y 725 --AAAGCTTCGGGGCAGAAACACCGATGGGAAGACCAGGACAGCCTGTAG 772
BSNT_00734___ 764 AGCACGTCGGCTGTTATGTGCTTCTGGCATCAGATGAGTCCTCTTACATG 813
||||.||.||.||.||||||||.||.||.||.||.||.||.|||||.|||
BPUM_0390___y 773 AGCATGTTGGTTGCTATGTGCTGCTTGCTTCTGACGAATCGTCTTATATG 822
BSNT_00734___ 814 ACAGGTCAGACCCTGCATGTCAACGGCGGAAACTTTGTGACGACATAA 861
|||||.||.||.||.||.|||||||||||...||||.|||..||||.|
BPUM_0390___y 823 ACAGGACAAACACTTCACGTCAACGGCGGTTCCTTTATGAATACATGA 870
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