Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00728 and BPUM_0388
See
Amino acid alignment /
Visit
BSNT_00728 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00728___mtlR.1.24716.seq
# -bsequence dna-align/BPUM_0388___mtlR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00728___mtlR-BPUM_0388___mtlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00728___mtlR-BPUM_0388___mtlR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00728___mtlR
# 2: BPUM_0388___mtlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2230
# Identity: 1424/2230 (63.9%)
# Similarity: 1424/2230 (63.9%)
# Gaps: 287/2230 (12.9%)
# Score: 4159.5
#
#
#=======================================
BSNT_00728___ 1 ATGTATATGACTGCCAGAGAACAAAAGCTGTTAAAGCACTTATTATT--A 48
|||||.||.||.||..|||||||.||..|..|.||..|| ||.||| |
BPUM_0388___m 1 ATGTACATAACGGCACGAGAACAGAAAATCATCAAATAC--ATCATTCAA 48
BSNT_00728___ 49 CAAAACAGATATATAACCGTAACTGAGCTTGCTG-AGCTGATGCAAGTCA 97
|||||..|.|||.|.|||.|...||||.|.||.| |.||| |.||.||.|
BPUM_0388___m 49 CAAAATCGTTATGTCACCATTCGTGAGATAGCCGAATCTG-TTCAGGTGA 97
BSNT_00728___ 98 GCACGAGAACCATTCACAGGGAACTCAAATCAATTAAACC---------- 137
|.||.|||||.|||||.||.|||||.|||||.||||||||
BPUM_0388___m 98 GTACAAGAACGATTCATAGAGAACTAAAATCGATTAAACCTATATTAAAG 147
BSNT_00728___ 138 ---GCTGATGGAAACCGTGGGGCTTACGTTAGATAAACAGCCCGGTAAAG 184
..|||| |||.|.||||||||||||||.||.||||
BPUM_0388___m 148 AATTATGAT-------------CTTTCATTAGATAAACAGCCGGGGAAAG 184
BSNT_00728___ 185 GGTTGAAAGCAGT--GGGAAGTCCCGAGGATAAACAAAAGCTGCTTACTG 232
|.|||||.||.|| |.||| |..|||||||||||...|||.|||.||.
BPUM_0388___m 185 GCTTGAAGGCCGTCGGCGAA--CAGGAGGATAAACAGCGGCTTCTTGCTC 232
BSNT_00728___ 233 ATTTATCATATGAACAGCA---TGAATACAGCGCCGACGAACGGAAACTG 279
||.|.|||.||||..|.|| ||||||.|||.|.||||||||||||||
BPUM_0388___m 233 ATATGTCAAATGAGGATCAAATTGAATATAGCTCTGACGAACGGAAACT- 281
BSNT_00728___ 280 CTCATTCTT-TGTTCGTTATTAGAGTCTCAGGAGCCCGTCAAACTGTACA 328
||.|.|.|| |||.|..||.|.||..|..|.||.||.||.|||.|.||.|
BPUM_0388___m 282 CTTAATATTATGTGCACTACTTGAAGCAAAAGAACCAGTGAAATTATATA 331
BSNT_00728___ 329 CGCTTGCTCATGATCTCCAGGTGACGAATGCCACGGTCAGCTATGACTTA 378
|.||.|||...|||.|.|||||.||.|||||.||..||||||||||||||
BPUM_0388___m 332 CACTCGCTGCCGATTTGCAGGTTACAAATGCGACCATCAGCTATGACTTA 381
BSNT_00728___ 379 GATGAGCTCGA--GAAGTGGATTTCTCCCTTCGGACTGACA-CTGATCCG 425
|||||.|| || ||| |||||..|.||.|.|||..|| || .|||||||
BPUM_0388___m 382 GATGAACT-GACGGAA-TGGATCGCGCCTTACGGTTTG-CAGTTGATCCG 428
BSNT_00728___ 426 CAAAAGAGGTTTTGGCATCCAGCTCATAGGGCCGGAGAATGCGAAACGGA 475
.|||.|.||.|.||||||..|..|.|.|||.||||||.|.||||||||.|
BPUM_0388___m 429 AAAACGCGGGTATGGCATTGAATTAAAAGGACCGGAGGAAGCGAAACGAA 478
BSNT_00728___ 476 AAATTGTCGGCAACTTGATTGTGAACCGTCTCGACATCCAAATGTTTTTG 525
|.||||||||||||.|.|||||..||||.|||||.||.|||.|||||||.
BPUM_0388___m 479 AGATTGTCGGCAACCTTATTGTCGACCGGCTCGATATTCAATTGTTTTTA 528
BSNT_00728___ 526 GAAGCGGTTGAATTAAACATCAAA---GGAA--AAACCGATTCTTCAGAG 570
|||.||.|||||.|.||.|||||| .||| |||.||| |.||.
BPUM_0388___m 529 GAAACGATTGAAATGAATATCAAACATCGAACGAAAGCGA-----CGGAA 573
BSNT_00728___ 571 AAAATGTTCGGGGTTGTCAGCAAAGGTGAGCTGCTAAAAATGGAGCGCAT 620
||..||||.||.|||||.||||.|||..|||||||||||.|.||.|||.|
BPUM_0388___m 574 AAGGTGTTTGGCGTTGTGAGCAGAGGACAGCTGCTAAAAGTAGAACGCCT 623
BSNT_00728___ 621 -CTTATTTCAGCTCAAAGAAAAAATCG-----CTTTTTCATTGTCCGACA 664
||| |||||..| |||||||.| |..|.||.||.||.||.|
BPUM_0388___m 624 GCTT-TTTCATTT-----AAAAAATAGACTGTCACTCTCTTTATCTGATA 667
BSNT_00728___ 665 GCTCCTATATAGCGCTCGTCGTCCATCTGACGTATGCGATCGAACGAATT 714
||.|||||||.|||||.|||||.||..|.||.|||||.||.|||||.|||
BPUM_0388___m 668 GCGCCTATATTGCGCTTGTCGTTCACTTAACCTATGCTATTGAACGGATT 717
BSNT_00728___ 715 AAGCTTGGGGAAACCATCACCATGGAGCAAAATGAGCTTGAGGAACTGAA 764
.|||||||.||||||||....|||||..|..|.|||||....|||||.||
BPUM_0388___m 718 CAGCTTGGCGAAACCATTCGAATGGAAGAGGAAGAGCTGCTTGAACTAAA 767
BSNT_00728___ 765 GAATGCGAAGGAATCCAGCTCGGCTCTTGA------------AATCGCGG 802
|....||||.|||| |||| ||||||..
BPUM_0388___m 768 GCGGACGAAAGAAT------------TTGAATCATCATTGCGAATCGCAA 805
BSNT_00728___ 803 GCGAGCTTGAACG--TGCCTT---CGGCGTGACGATTCCAGAGGCGGAGG 847
|.|..|||||||| || || .|.||| |||.||.||.||.||||
BPUM_0388___m 806 GAGCACTTGAACGCATG--TTTAATGTCGT---GATCCCCGAAGCAGAGG 850
BSNT_00728___ 848 TCGGCTATATTACAATCCATCTTCGAAGCGCCAATCGAAAATACAAAACA 897
|.||.|||||.||.||||||||.||.||.|||||.||.|..|......||
BPUM_0388___m 851 TTGGTTATATGACCATCCATCTGCGCAGTGCCAACCGCAGCTTTGGGGCA 900
BSNT_00728___ 898 GAATACAAAGCG----CAGGAAATTGAGCTGGAAACAGCCCTGCAAACAA 943
|||||| || .|.|||||.||||||||.|..||..|...|||.|
BPUM_0388___m 901 GAATAC----CGGATTGATGAAATCGAGCTGGATATCGCGATTAGAACGA 946
BSNT_00728___ 944 AGCGGCTCATTGCTTTTATTTCAGACAAAATCAGAATGGATCTGACGAAA 993
||...|||||||.||||||||||.|.||||.|.|
BPUM_0388___m 947 AGAAACTCATTGATTTTATTTCAAATAAAACCGG---------------- 980
BSNT_00728___ 994 AACTACTCTTTATAT--GAAGGCTTGATTG----------------CCCA 1025
||||..||||.|| |||.|.||.|||| |.||
BPUM_0388___m 981 --CTACCATTTAAATGAGAATGATTCATTGTATGAGGGACTCGTATCTCA 1028
BSNT_00728___ 1026 TTTGGAGCCGGCCGTCAGCCGCATAAAAGAAAATATTGAG-ATATACAAT 1074
|.|.||.||.|||.|.|.|||..||||.|||||.| |||| ||.||.|||
BPUM_0388___m 1029 TCTCGAACCCGCCATGAACCGTTTAAAGGAAAAGA-TGAGAATCTATAAT 1077
BSNT_00728___ 1075 CCGATGAAGGAACAAATCAAGCGCGATTATTTTCTGCTTTATATGGCGAT 1124
||..|.|...|||||||.||....||.||.|||||.||||..||||||||
BPUM_0388___m 1078 CCACTTACACAACAAATTAAAAAGGACTACTTTCTACTTTTCATGGCGAT 1127
BSNT_00728___ 1125 CGAAGAAGGCGTCGAAAAGTAT-TTTCCGGGCATGTCCTTTACTGATGAT 1173
.||||||||.|||| |..||.| |||||.|..||..|.|||.|.||.|||
BPUM_0388___m 1128 TGAAGAAGGAGTCG-AGCGTTTCTTTCCAGAGATTGCATTTCCAGAGGAT 1176
BSNT_00728___ 1174 GAAATCGCTTTTATCGTTCTTCACTTTGGCTCGGCTCTTGAAATCAAAAA 1223
||||||||||||||.||.||||||||||||||.|..||||||||.|||||
BPUM_0388___m 1177 GAAATCGCTTTTATTGTGCTTCACTTTGGCTCAGTGCTTGAAATTAAAAA 1226
BSNT_00728___ 1224 AGAAGAAGCAAAAGTGAAAGCGCTTGTCGTCTGCTCAAGCGGGATCGGCT 1273
|||||||.|.||..|..|.||..|.|||||.||.||||||||.|||||.|
BPUM_0388___m 1227 AGAAGAAACGAACATTCATGCATTGGTCGTGTGTTCAAGCGGAATCGGTT 1276
BSNT_00728___ 1274 CCTCGAAAATGCTTGCCTCCAGACTGAAAAAAGAAATGCCGGAAAT---T 1320
|.||.||||||||.||.||..|..|.|||||.|||.||||.||||| |
BPUM_0388___m 1277 CGTCCAAAATGCTCGCTTCTCGTTTAAAAAAGGAATTGCCAGAAATCGCT 1326
BSNT_00728___ 1321 GAATCGTTTGATATGTCATCCCTGATCGAGCTAAAGGGGAAGGATG-TTC 1369
||| ||.|||.||||.|||.||||.||||||||.|..|..|||| .||
BPUM_0388___m 1327 GAA---TTCGATCTGTCTTCCTTGATTGAGCTAAAAGAAATCGATGCATC 1373
BSNT_00728___ 1370 AAGCCTATGATATGATTGTGTCCACTGTACCGATTCCTTATGAAAACATT 1419
||| ||||||.||||||||.||.||.||.||.||.||.|||||..|.||.
BPUM_0388___m 1374 AAG-CTATGACATGATTGTCTCGACCGTCCCTATCCCATATGAGCATATC 1422
BSNT_00728___ 1420 GATTACATCATGGTCAGCCCGCTATTAAATGAGGAAGACGCAAACCAGGT 1469
|||||||||||||||||.|||||..||||.|||||.||.||.|..|..||
BPUM_0388___m 1423 GATTACATCATGGTCAGTCCGCTCCTAAACGAGGATGATGCGATGCGTGT 1472
BSNT_00728___ 1470 CAAGCAGTATATCAAGCGGAAGATTCCCCTTAT-TC-TTAACAAAAAAAG 1517
.|||....||||.||.||.||||| ||||||| || ||.|.||||||||
BPUM_0388___m 1473 GAAGGCTCATATAAAACGAAAGAT--CCCTTATATCATTGAGAAAAAAAG 1520
BSNT_00728___ 1518 AA-GCACGAAG-----GAAGAGGCGCAGCAAG-----CTGATGTACCTGA 1556
|| |.|.|||| .||||..||..||||| .||| |
BPUM_0388___m 1521 AATGAAAGAAGCCGACAAAGAATCGGTGCAAGAATCCGTGA--------A 1562
BSNT_00728___ 1557 CATGCTAGAGGCGGCGGAAAGCATAGGGCG--GTATATGGAGGTTATTCA 1604
.|||.|.|.||..|| |.||||...|.|| .||.|||...||.||||.
BPUM_0388___m 1563 TATGATGGTGGTAGC--AGAGCAGGTGACGAATTACATGTCTGTGATTCG 1610
BSNT_00728___ 1605 AAATGTTCTGCGCCATTTTACGCTAGCTCAACTCAAAACAAA------CC 1648
.|...||.||..|||||||||..|.| || ||||.||| .|
BPUM_0388___m 1611 TAGCATTTTGTCCCATTTTACCATCG---AA---AAAAGAAAGGCGATGC 1654
BSNT_00728___ 1649 CGGACCAT------AGCATGCTTCTGCTAG-AGCTTTTTCAACAGC-TGA 1690
||.|.||| |.||| |.|| ||||..|||..|||| |||
BPUM_0388___m 1655 CGCAGCATGAGGCAACCAT-------CAAGCAGCTGCTTCGTCAGCTTGA 1697
BSNT_00728___ 1691 AGAAGGATGGCCTGATCCGTGATCCGGAAAA---AGC-CGAGGTTTGCCT 1736
|| ||||.||..|.|||....||.||||..| ||| .|.|||||
BPUM_0388___m 1698 AG-AGGAAGGATTTATCACACATGCGGATGAGGTAGCAAGTGGTTT---- 1742
BSNT_00728___ 1737 GGCT-GAGCGGGAGAAACAAGGGGGATTGGGAATCCCCGGAACAAACATG 1785
.|| ||.||.||..|.|||||.||.||.|||||.||.||.||..|..|.
BPUM_0388___m 1743 -ACTAGAACGTGAACAGCAAGGTGGTTTAGGAATTCCTGGTACCGAGTTT 1791
BSNT_00728___ 1786 GCGCTTTATCATCTCAAAAATGATGAAATCGTCCTG----CCTTTTTTCA 1831
||.||||.||||.| |||..|||.|.||.||..| |..|.||||
BPUM_0388___m 1792 GCTCTTTTTCATTT---AAAGCATGCATTCATCAAGGAACCAATCTTTC- 1837
BSNT_00728___ 1832 AAATGTTTGATC----TCA-GCACCTCCTATGAAGTGGATGGCATGGACG 1876
|.||||.||||| ||| ||| ||.||.||..|..|||||||.|
BPUM_0388___m 1838 ATATGTATGATCTTGATCAGGCA-----TACGAGGTCAAAAGCATGGATG 1882
BSNT_00728___ 1877 GAATTACCCTCAG-----GATGACACGCATCCTCGTCATGATGGCGCCTG 1921
| |...||| ||||.||.|.||.|||.|.|||.||||||
BPUM_0388___m 1883 G-----CGGGCAGCAGCAGATGTCAAGAATGCTCATGATGTTGGCGC--- 1924
BSNT_00728___ 1922 GCTCATTATCT--GC--TGAAGGCTCGGAGATTTTAAGCGCGATCAGCTC 1967
|.||..|.|| || .|||||.||.||.||.||.||...||||||.||
BPUM_0388___m 1925 -CGCAAGAGCTAGGCAAGGAAGGGTCAGAAATGTTTAGTCTGATCAGTTC 1973
BSNT_00728___ 1968 GGCAATTATCGAGAGCGGAGAAAGCATGGCG------------GGGTTTC 2005
..|.||.||.||.||.|..|||||||||.|| ||.|...
BPUM_0388___m 1974 ATCCATCATTGAAAGTGAGGAAAGCATGACGCTTTATGGTCATGGATCAA 2023
BSNT_00728___ 2006 AGGAAGAAGGAGAACAAGAATTGTATCAGCGGTTAAACCGCATATTTTTC 2055
|||||||...||||||..|||||.||||||.|| |.|.||
BPUM_0388___m 2024 AGGAAGATATAGAACAGAAATTGCATCAGCTGT-----------TCTATC 2062
BSNT_00728___ 2056 ACATGGATGAAAGAAAAAAACATACTGTAA 2085
| ||...|.||||||..||| |..||||
BPUM_0388___m 2063 A-ATTTGTAAAAGAAGCAAA---ATGGTAA 2088
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.