Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00717 and BPUM_0384
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00717___kipR.1.24716.seq
# -bsequence dna-align/BPUM_0384___kipR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00717___kipR-BPUM_0384___kipR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00717___kipR-BPUM_0384___kipR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00717___kipR
# 2: BPUM_0384___kipR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity: 515/823 (62.6%)
# Similarity: 515/823 (62.6%)
# Gaps: 131/823 (15.9%)
# Score: 1556.5
#
#
#=======================================
BSNT_00717___ 1 ATGCAGAATAAAAATAAAACCGTAGTCAAATCTATGGCGCTGCTTAATT- 49
||||||||.|.||||||||||||.||.|||||.||||.| |||
BPUM_0384___k 1 ATGCAGAACACAAATAAAACCGTTGTGAAATCAATGGAG-------ATTT 43
BSNT_00717___ 50 ------TGTTTTT---GCATAAACCAAGCCTAACCTTAAGTGAACTGGTG 90
|||||.| .|||.|.|.| .||||.||.|.||||.||.|.
BPUM_0384___k 44 TGCGGCTGTTTATCGCCCATGATCAA---TTAACATTGAATGAAATGATC 90
BSNT_00717___ 91 TCGCTGACGGGAATGCCGAAGACCTCTGTTCACCGGATGGTCAGCTCCTT 140
..|||..|.||.||||||||.||.|||||.|||||.||||..|||||.||
BPUM_0384___k 91 GAGCTCTCCGGCATGCCGAAAACGTCTGTGCACCGCATGGCGAGCTCGTT 140
BSNT_00717___ 141 GGAGGAAATGGGGTTCCTCAGTCG----GGATGCGTCCGGCGCTTATTCG 186
....||.|||||.|| |.|.| ..|||..||.||.|.||||..|
BPUM_0384___k 141 AACCGATATGGGATT----ATTAGAAAAACATGATTCAGGTGTTTATCGG 186
BSNT_00717___ 187 CTGGGATTGGTGTTTTTGGAATTCGGACAGCTTGTCGCTGACAGGCTGGA 236
.|.||..||.|||||.|.||||.|||.||||||||.||.|||.|.||.||
BPUM_0384___k 187 TTAGGCCTGATGTTTCTAGAATACGGTCAGCTTGTGGCGGACCGCCTTGA 236
BSNT_00717___ 237 TATCAGAAAAATAGCGAAACCGGTGATGGAAGAGCTGTGCCGG--GAAGT 284
|||..|.|.|||.||.|.|||..|.||||||| ||| |||.|| |||||
BPUM_0384___k 237 TATTCGGAGAATTGCAAGACCATTTATGGAAG-GCT-TGCGGGATGAAGT 284
BSNT_00717___ 285 GGATGAGGCCGTGCAGTTGATCATGAGGGACGGCAATGAAGCGATATACG 334
||..||.||.||.|||.|.|||.|..|.||.||..|||||||.||.||||
BPUM_0384___k 285 GGGAGAAGCTGTCCAGCTCATCGTTCGTGAAGGAGATGAAGCCATTTACG 334
BSNT_00717___ 335 TTGAGAAAATAGAAGGGACACAGACTGTGCGGCTGTATACGGCGATCGGC 384
|.||.|||||.||||||||.|||.||||.||.||.|||||.||..|||||
BPUM_0384___k 335 TGGATAAAATTGAAGGGACGCAGCCTGTTCGTCTCTATACCGCCGTCGGC 384
BSNT_00717___ 385 AGGCGTTCCCCCCTATACGCGGGAGCGTGCGCCAGAAGCATTCTGTCCTT 434
||||||||.||..||||.||.||.||.||.||.|||||.|||||.|||||
BPUM_0384___k 385 AGGCGTTCTCCTTTATATGCAGGTGCTTGTGCAAGAAGTATTCTCTCCTT 434
BSNT_00717___ 435 TCTTCCCCGTGAAGAAATCGA------AGCATACATCAAACAAACCGAGC 478
|.|.|| |||||..|| .||.||.|||.|
BPUM_0384___k 435 TTTACC------AGAAACAGAGAGACTTGCCTATATCGA----------- 467
BSNT_00717___ 479 TCATTTCGATT---------------GGCTCCGGAACGATTACCGATCCC 513
||||||| ||...|||.||.|||||.|||
BPUM_0384___k 468 ----TTCGATTGAACTAGGGAAAATCGGAATCGGGACCATTACAGAT--- 510
BSNT_00717___ 514 GAAAAAC--TGCTTCAGGAGA-----TTGATGCCTCTGTGCAAAAT---- 552
|||.| |.|||| ||.| |.||.|..|| ||||
BPUM_0384___k 511 --AAAGCGGTTCTTC--GAAACATACTGGAAGAATC------AAATGAGC 550
BSNT_00717___ 553 --GGCTATACTGTCAGCTATTCAGAGCTCGAAAACTATACGGCGGCGATC 600
||.|||||..|.||||||||.|||||.|||||.|||||.||.|||.|.
BPUM_0384___k 551 GGGGATATACGCTAAGCTATTCGGAGCTTGAAAATTATACAGCTGCGGTT 600
BSNT_00717___ 601 GGCGCCCCGATCTTTAATCATAAGCGCC------AAGTGGCAGCCGGCAT 644
||.|||||.||.||.||||| || ||||..||||.||.||
BPUM_0384___k 601 GGAGCCCCTATTTTCAATCA------CCTTGGAGAAGTCACAGCAGGTAT 644
BSNT_00717___ 645 TAGCATTGCAGGCTTTGAAGCGAGATT-TACAGAAGACAGGCTGCCCTAT 693
||||||||||||.|||||||| ||.|| |..|.||||..|.||.||.||.
BPUM_0384___k 645 TAGCATTGCAGGGTTTGAAGC-AGGTTATCAAAAAGAACGTCTTCCATAC 693
BSNT_00717___ 694 TTAACAGAAAAGGTGAAGGACGCCGCTTTACAG----ATTTCAAGAAAAA 739
||||.||||.|.||.||..|.||||| .|| ||.||.|||.||.
BPUM_0384___k 694 TTAATAGAACAAGTCAAAAAAGCCGC----AAGCGGTATCTCCAGAGAAT 739
BSNT_00717___ 740 TAGG-----ATATACATAA---- 753
|||| ||.||.|.||
BPUM_0384___k 740 TAGGTTTTCATCTAAACAAATAA 762
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