Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00716 and BPUM_0383
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00716___kipA.1.24716.seq
# -bsequence dna-align/BPUM_0383___kipA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00716___kipA-BPUM_0383___kipA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00716___kipA-BPUM_0383___kipA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00716___kipA
# 2: BPUM_0383___kipA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1095
# Identity: 656/1095 (59.9%)
# Similarity: 656/1095 (59.9%)
# Gaps: 162/1095 (14.8%)
# Score: 1749.0
#
#
#=======================================
BSNT_00716___ 1 TTGAGCATGAAAGTATTAAAGCCCGGACTGCTCACAACGGTTCAGGATAT 50
|||||.||..|.||..|.|||||.|||.||.|||||||..||||.||||.
BPUM_0383___k 1 TTGAGTATTCATGTCATCAAGCCAGGAATGTTCACAACCATTCAAGATAA 50
BSNT_00716___ 51 AGGCAGAACGGGTTACCAAAAATACGGCGTTCTGGCCAGCGGCGCTATGG 100
|||.||.|..||.||.|||||.||.|||||..|..|.|||||||.|||||
BPUM_0383___k 51 AGGGAGGAAAGGCTATCAAAAGTATGGCGTCTTAACGAGCGGCGGTATGG 100
BSNT_00716___ 101 ACACGGTATCACTGCGCATTGCCAATTTGTTGATAGGAAACGGTGAAAAT 150
||.||.|.|||||..|.||||||||..|..|.|.|||.||||..||||..
BPUM_0383___k 101 ACCCGCTCTCACTTAGAATTGCCAACATTCTCACAGGCAACGAGGAAAGC 150
BSNT_00716___ 151 GAAGCAGGTCTCGAAATAACGATGATGGGGCCCGGTCC------GTCGTT 194
|||||.|...|.|||||.||..|.||||||||.||.|| |.|||.
BPUM_0383___k 151 GAAGCCGTATTGGAAATCACATTAATGGGGCCGGGGCCTGTGTTGACGTG 200
BSNT_00716___ 195 TCATTTTTCAAAACAGACACTGATTGCTGTGACAGGGGCGGACTTCACGC 244
||| |||..|..|.||.|||.|.|||||.||.||.||
BPUM_0383___k 201 TCA------AAAGGATGCGCTTATTTCAGTGACTGGCGCTGA-------- 236
BSNT_00716___ 245 TGCG--------TATTAATGACGAGGAAGCGCCTTTATGGAAGC----CT 282
||.| ||||.|||..|||..|||..||||||||||.| ||
BPUM_0383___k 237 TGTGGAGATCGATATTGATGGAGAGCCAGCTTCTTTATGGAAACCACTCT 286
BSNT_00716___ 283 GTGCTCATTAAGGAAAACAGCACAGTCAGCTTTGGCCCCTGCAAACTCGG 332
.||.||..|.|||| |||||..|||.||||||.||.||||||...||
BPUM_0383___k 287 TTGTTCGATCAGGA----AGCACGCTCACCTTTGGTCCTTGCAAAAGGGG 332
BSNT_00716___ 333 CAGCCGTGCTTATTTGGCGGCAGCCGGCGGCATCGAGGTGCCTGCCGTCA 382
|.||||..||||..|.||.|..||.||.||..|.||.|||....|.||||
BPUM_0383___k 333 CTGCCGCTCTTACCTTGCTGTGGCAGGTGGATTTGATGTGGAAACGGTCA 382
BSNT_00716___ 383 TGGATAGTAAAAGCACATACGTCAGAGGAAGCATCGGCGGACTTCATGGC 432
||||.||.||||||||.||.||.||||.|.|.|||||.||.||..|.||.
BPUM_0383___k 383 TGGAGAGCAAAAGCACCTATGTGAGAGCAGGAATCGGTGGGCTGAACGGA 432
BSNT_00716___ 433 AGAGCGCTTCAAAAAGAAGATGAACTGAACATTGGAGAGATGTCAGCTCT 482
.|..|||||.||||||.|||.|..|||...||||||.||...||| |||.
BPUM_0383___k 433 CGTCCGCTTGAAAAAGGAGACGTCCTGTCTATTGGAAAGCCTTCA-CTCG 481
BSNT_00716___ 483 T------TCG---------------CAAA--CCATCCTTTCCCGCTTAAG 509
| ||| |||| |||||
BPUM_0383___k 482 TAGCGAATCGGTTGTCTAATAGACTCAAAAGCCATC-------------- 517
BSNT_00716___ 510 TTCGCTGCTTGGAAAACAGG-GATTTGCA--GCACCGAAGTG----GTCA 552
|| ||||||| |...|.|| |||||..|.|| ||||
BPUM_0383___k 518 ---------TG--AAACAGGCGGCGTACAGCGCACCCGATTGGACTGTCA 556
BSNT_00716___ 553 GTCAGCCGCGGCAGATTT--CTGCCATTGAAGAAGAAT--CCCGTTATTC 598
||||..| |||..||| |.||.|..|| ||| ||.||.||||
BPUM_0383___k 557 GTCATAC---GCACTTTTTACCGCTACGGA-----AATCGCCAGTGATTC 598
BSNT_00716___ 599 GGGTGCT-----GGAAGGAAAGCAATTTGCCTTTTTCACAGAAGAATCA- 642
||||||| ||| ||.|.| |||...|||||| ||||||||
BPUM_0383___k 599 GGGTGCTACCAGGGA--GACACC--TTTCTTTTTTTC----AAGAATCAT 640
BSNT_00716___ 643 ---AAAACGCGTTTTTATGAAGAAGCATTTCGTGTCACGCCGCAGTCCGA 689
|||.|.|.||||| .|||.|..|.||||..||||||||.||.||.||
BPUM_0383___k 641 CCCAAAGCACCTTTTT-CGAACAGCCTTTTCAGGTCACGCCTCAATCAGA 689
BSNT_00716___ 690 CCGTATGGGCTACAGGCTCAAAGGAGAACC-GCTCGAACTGAAGGCCCCG 738
.||.|||||.|...|..|.|||||.||.|| |.|| ||.|.||.|....|
BPUM_0383___k 690 TCGCATGGGTTGTCGTTTGAAAGGGGAGCCAGTTC-AATTAAAAGAAAAG 738
BSNT_00716___ 739 CTTGAGATGGTGTCGGAAGCGGTTTCATTCGGAACAGTTCAGGTGCCGCC 788
|||||..||.|.||.||.||.|||.|.||.||..|..||||..|.||.||
BPUM_0383___k 739 CTTGAATTGATTTCTGAGGCAGTTGCTTTTGGTTCTATTCAAATTCCTCC 788
BSNT_00716___ 789 TGACGGCAACCCGATTATCCTGCTTGCAGACCGGCAGACGACTGGCGGCT 838
||||||..|.||||||||.||.||.|||||.|||||.||.||.|||||.|
BPUM_0383___k 789 TGACGGACAGCCGATTATTCTACTGGCAGATCGGCAAACAACAGGCGGAT 838
BSNT_00716___ 839 ATCCGAGGA---------TCGCGCACATCATATCCGCTGATCTTCCGATT 879
|.|||.|.| |.||| .|.|.||||||.|||.|.
BPUM_0383___k 839 ACCCGCGAATTGGAGAAGTTGCG---------ACGGTTGATCTACCGCTC 879
BSNT_00716___ 880 GTTTCCCAAATCATGCCGGGCGAGCACGTTCAGTTTGAGCCTGTGTCCCT 929
.|..|.|||...|||||.||.|.|.|..|..|.|||.||| |..||..|
BPUM_0383___k 880 ATAGCACAAGCGATGCCTGGTGCGAATTTGTATTTTAAGC--GAATCGAT 927
BSNT_00716___ 930 C--CAGGAGGCAG---AAGCGC---TTGCGGTAGAACGGGAACAGCATAT 971
| |||||.|||| |.|||| ||..|..||||...|||| |
BPUM_0383___k 928 CATCAGGATGCAGAGCAGGCGCTATTTAAGCAAGAAGCAGAAC------T 971
BSNT_00716___ 972 AAAAGAACTGAAAACGAGAATGAAGATGGAATGGCTGAC--ATAG 1014
.||.||||||....|.|||||.|||.|.||| ||..|| .|||
BPUM_0383___k 972 GAAGGAACTGGCTGCCAGAATTAAGCTAGAA--GCCTACGTTTAG 1014
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