Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00714 and BPUM_0381
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00714___ycsI.1.24716.seq
# -bsequence dna-align/BPUM_0381___ycsI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00714___ycsI-BPUM_0381___ycsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00714___ycsI-BPUM_0381___ycsI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00714___ycsI
# 2: BPUM_0381___ycsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity: 547/854 (64.1%)
# Similarity: 547/854 (64.1%)
# Gaps: 124/854 (14.5%)
# Score: 1695.0
#
#
#=======================================
BSNT_00714___ 1 --GTGGAGCAATTAAACAAAATGGCGCCAAAGGATGTACGCGCC----CT 44
|...|.|.||.||||| ||||.||| |.
BPUM_0381___y 1 ATGAATATCTATCAAACA------------------TACGAGCCTTCACA 32
BSNT_00714___ 45 GATACGAGAGGGGA------------AAATAAACGGGCCGACCGCAGGCA 82
|||..|||||..|| ||||.|..||.||.||.||.||..
BPUM_0381___y 33 GATCAGAGAGTTGATTCGTAAAAAAGAAATCACAGGACCAACGGCTGGTT 82
BSNT_00714___ 83 TGTCCGGCGGCTACGCCCAAGCGAATCTTGTGGTTTTGAAAAAGGACCTT 132
|..|.|..||.||.||.|||||.|||.|..||.|..|.|||||.||.|||
BPUM_0381___y 83 TAGCAGAGGGATATGCTCAAGCCAATTTAATGATCGTCAAAAAAGAACTT 132
BSNT_00714___ 133 GCGTTTGATTTTCTGCTGTTTTGCCAGCGAAATCAAAAGC--CCTGCCCC 180
||.||||||||||||.|||||||.|||||.|||| ..|| |.||||||
BPUM_0381___y 133 GCCTTTGATTTTCTGTTGTTTTGTCAGCGTAATC--CGGCTGCATGCCCC 180
BSNT_00714___ 181 GTGCTGGATGTGACTGAAGCAGGTTCG--CCTGTGCCGTCTCTGGCTGCG 228
.||||.||||| ||||.|||.||.| | ||.||||||.....|.|.|||
BPUM_0381___y 181 TTGCTTGATGT-ACTGGAGCCGGGT-GATCCCGTGCCGAGAAAGTCAGCG 228
BSNT_00714___ 229 CCTGATGCTGATATCAGAACGGACTTTCCGAAATACCGTATTTACAGGCA 278
||..|.||.|||||..|.|||||.|||||.|||||||||||||||||..|
BPUM_0381___y 229 CCCAAAGCGGATATTCGTACGGATTTTCCTAAATACCGTATTTACAGAAA 278
BSNT_00714___ 279 CGGTATCCT--AACGGAAGAAGTATCTGATATTACGCCATACTGGGAGGA 326
.||.||.|| || |||||.||.||.||||||.|..||||.||||||||
BPUM_0381___y 279 GGGAATTCTTCAA--GAAGAGGTGTCAGATATTTCTGCATATTGGGAGGA 326
BSNT_00714___ 327 CGATTTTGTCGGCTTTCTGATCGGATGCAGTTTCTCCTTTGAACAGGCAC 376
.|||.|.||.|.||||||.|||||.||||||||..|.|||||.||.||.|
BPUM_0381___y 327 TGATATGGTTGCCTTTCTCATCGGTTGCAGTTTTACGTTTGAGCATGCGC 376
BSNT_00714___ 377 TGATCAATAATGGGATAGCTGTCCGGCATATTGATGAGGGGACA-AACGT 425
|.||....||||..||..||||.||.|||||||| .|..||.|| |||||
BPUM_0381___y 377 TCATGCTGAATGATATCCCTGTTCGCCATATTGA-AAATGGTCATAACGT 425
BSNT_00714___ 426 CTCAATGTATAAAACGAATATCGATTGT----GTGCCGGCGGGGGCGTTT 471
..|.||||||.||||||||||||.|||| | ||||||||..|||
BPUM_0381___y 426 TCCGATGTATCAAACGAATATCGCTTGTAAAAG----GGCGGGGGTATTT 471
BSNT_00714___ 472 CACGGACAGATGGTTGTCAGCATGAGGCCGGTTCCTGAACGGCTGGC--- 518
||.||.|.|||||||||||||||||||||..||| |||| ||
BPUM_0381___y 472 CATGGCCCGATGGTTGTCAGCATGAGGCCCATTC-----CGGC--GCATC 514
BSNT_00714___ 519 -------------TGTACGTGCCGCACAAGTGACCTCGCGTTTTCCGGCT 555
||| |||||||||.||..|.||.||..|.
BPUM_0381___y 515 AGATCACAAGGAGTGT---------ACAAGTGACATCTAGATTCCCATCA 555
BSNT_00714___ 556 GTGCACGGAGGGCCGATCCATATCGGCAATCCGGGAGC---AATCGGGAT 602
||.||.||.||.||.||||||||.||..|.|| ||| .||.||.||
BPUM_0381___y 556 GTTCATGGCGGTCCCATCCATATAGGTGACCC---AGCGATGATTGGAAT 602
BSNT_00714___ 603 TCGCGATCTCGGGA--AACCGGATTTCGGAGA--------TGCCGTTTCC 642
|..|.||.| ||| |.|||||.||.||||| ||
BPUM_0381___y 603 TGCCAATGT--GGATCAGCCGGACTTTGGAGAAACATCTGTG-------- 642
BSNT_00714___ 643 ATTCGTGACGGCGAGGTTCCTGTTTTTTGGGCATGCGGGGTGACCCCGCA 692
|||...||.||.|||||.||.||.|||||||||||.||.|||||.|||||
BPUM_0381___y 643 ATTAAAGAAGGAGAGGTCCCGGTGTTTTGGGCATGTGGTGTGACGCCGCA 692
BSNT_00714___ 693 AGCCGTGGCTATGAATGTAAAGCCTGAAATGGTCATCACACATGCGCCGG 742
||||||.|..|||.||..|||.||.|||||.|..||.||.|||||.||.|
BPUM_0381___y 693 AGCCGTCGTCATGCATACAAAACCAGAAATTGCGATTACTCATGCACCTG 742
BSNT_00714___ 743 GGCATATGCTCATCACAGATATTCGAGACGAGTC----GCTTGCGGTGCT 788
|.||||||.|||||||||||...||||| || |||.|..|||||
BPUM_0381___y 743 GCCATATGTTCATCACAGATCAACGAGA----TCAACAGCTCGGTGTGCT 788
BSNT_00714___ 789 GTAA 792
.||.
BPUM_0381___y 789 TTAG 792
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