Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00712 and BPUM_0380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00712___ycsG.1.24716.seq
# -bsequence dna-align/BPUM_0380___ycsG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00712___ycsG-BPUM_0380___ycsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00712___ycsG-BPUM_0380___ycsG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00712___ycsG
# 2: BPUM_0380___ycsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1262
# Identity: 879/1262 (69.7%)
# Similarity: 879/1262 (69.7%)
# Gaps: 91/1262 ( 7.2%)
# Score: 2915.5
#
#
#=======================================
BSNT_00712___ 1 ATGGAGCAGCAGAAA---AAG-ACA-GCAGGAAAAAAAGCGGGAAGCTGG 45
|||.|..|.|||.|| ||| ||| |.|||.|..|||| ||||| |.||
BPUM_0380___y 1 ATGAAAAAACAGGAAGTGAAGTACACGAAGGCATCAAAG-GGGAA-CCGG 48
BSNT_00712___ 46 TCATTGCTGATGGGCGCCGCCTTTTTAATGGCGACATCAGCAATCGGACC 95
||..||||.||||||||.|||||||||||||||||.||.||.||||||||
BPUM_0380___y 49 TCTATGCTCATGGGCGCAGCCTTTTTAATGGCGACGTCCGCCATCGGACC 98
BSNT_00712___ 96 GGGTTTCCTCACCCAAACCGCAACATTCACAAACACACTCGCAGCA---- 141
|||.||..|.||.|||||..|....|||| |||||||
BPUM_0380___y 99 GGGATTTTTAACACAAACGACTGTCTTCA----------CGCAGCAGCTT 138
BSNT_00712___ 142 ------AGCTTCGGTTTTGTCATCTTAATCTCTATTATTTTAGATATTTT 185
|||||.||.|||||.||..|.|||||||||.|.|||||||||||
BPUM_0380___y 139 ACGGCTAGCTTTGGATTTGTTATTCTCATCTCTATTTTGTTAGATATTTT 188
BSNT_00712___ 186 CGCCCAAACCAATGTGTGGCGCATCATCGCAGTTTCTGGAAAACGAGGTC 235
.||.|||||||||||.||||||||||||||.||.||.|.|||||||||.|
BPUM_0380___y 189 TGCGCAAACCAATGTATGGCGCATCATCGCTGTGTCAGAAAAACGAGGGC 238
BSNT_00712___ 236 AGGAAATTGCGAATATGGTGCTTCCCGGACTGGGATATTTCATCGCCATT 285
||||.|||||.||||||||.||.||.||.||.||||||.|..|.||..||
BPUM_0380___y 239 AGGATATTGCAAATATGGTTCTGCCGGGTCTCGGATATGTACTGGCTGTT 288
BSNT_00712___ 286 CTCGTCGTGCTTGGCGGACTAGCTTTTAATATTGGGAATATCGGAGGGGC 335
.|..|.||..|.||.||.||.||.|||||.||.||.|||||||..||.||
BPUM_0380___y 289 TTGATTGTCATGGGAGGGCTTGCCTTTAACATCGGAAATATCGCTGGTGC 338
BSNT_00712___ 336 CGGGCTGGGACTTCAGGTGCTGTTCGGCATTACACC------TGAAACAG 379
.||.||.||..||||||||.|....||.|||...|| ||.|.||
BPUM_0380___y 339 TGGTCTCGGTTTTCAGGTGATCACAGGAATTGATCCGCGAATTGGAGCA- 387
BSNT_00712___ 380 GCGCTTTAATCAGTGCCGTTATCGCCATTTTGATTTTTGTCATCAAGGAA 429
||| ||||||||.|||||.||.|||.||||.|||||.|||||.||.
BPUM_0380___y 388 --GCT---ATCAGTGCGGTTATTGCGATTCTGATCTTTGTGATCAAAGAG 432
BSNT_00712___ 430 GCAGGAAAAGCGATGGACCGTTTTACGCAAATCGCGGGGTTCGTGATGAT 479
||.||||||||.|||||||||||.||.||.||.|||||.||.||.|||||
BPUM_0380___y 433 GCTGGAAAAGCAATGGACCGTTTCACACAGATAGCGGGCTTTGTCATGAT 482
BSNT_00712___ 480 TATTTTAACGGTCTACGTTGCGGCGA---CGACAGCTCCTCCGGTCGGAC 526
....||.|.|.|.|| ||.||||| |.|||||.||.||.||.||
BPUM_0380___y 483 CGGCTTGATGCTGTA---TGTGGCGATTTCAACAGCACCGCCTGTTGG-- 527
BSNT_00712___ 527 AGGCAGTCGCA---AATACATTCGTCCCGGAACACATCAGCATATTT--G 571
||.||..||| |..||.||.|||||..||.|.|| ..|||||| .
BPUM_0380___y 528 -GGAAGCGGCACTCAGAACCTTTGTCCCAAAAGAAAT--TGATATTTTAT 574
BSNT_00712___ 572 CCATTGTCACCCTAGTGGGCGGAACCGTCGGCGGTTATATCACATTTGCC 621
|.|||||.||.||.||.||.||.||.||.|||||.||||||...|||||.
BPUM_0380___y 575 CGATTGTGACACTTGTCGGTGGGACAGTTGGCGGCTATATCGTTTTTGCT 624
BSNT_00712___ 622 GGAGGACACCGTTTGCTTGATGCCGGAATTAAAGGGAAGGAATCCA-TTC 670
||.|||||.|||.|..|.|||||.|||||||||||||||| ||.|| |||
BPUM_0380___y 625 GGTGGACATCGTCTATTAGATGCTGGAATTAAAGGGAAGG-ATGCACTTC 673
BSNT_00712___ 671 CGCAGGTGACAAAAAGCTCGGTTGTCGGCATTTTAATTACATCTGTCATG 720
|.||||||||.||||||||.|||.|||||||..|.|||||||||||.|||
BPUM_0380___y 674 CTCAGGTGACCAAAAGCTCTGTTTTCGGCATCCTGATTACATCTGTGATG 723
BSNT_00712___ 721 CGTATCGCTCTTTTTCTTGCGGTTCTAGGCGTTGTATCGAAAGGCCTGCA 770
|||.|||||.|.|||.|.||.||.|||||.||.||.||.||.|||.|.||
BPUM_0380___y 724 CGTGTCGCTTTATTTTTAGCCGTGCTAGGAGTGGTCTCAAAGGGCTTACA 773
BSNT_00712___ 771 CATCGATGAAAGCAACCCGGCG---------GCTTCTGTCTTCAAGCTGG 811
.||.||| |||||| ||||||||.|||.||.|.|
BPUM_0380___y 774 AATTGAT---------CCGGCGAATCCGCCTGCTTCTGTATTCCAGTTAG 814
BSNT_00712___ 812 CTGCTGGAAATGTCGGTTATAAAATTTTCGGATTGATCATGTGGTCTGCG 861
|..||||||||||.|||||||||||.|||||..|.||.||||||.|.|||
BPUM_0380___y 815 CGTCTGGAAATGTTGGTTATAAAATGTTCGGGATCATTATGTGGGCAGCG 864
BSNT_00712___ 862 GCGATTACGTCTGTTATTGGAGCAGCCTATACATCTGTTTCATTTTTCAA 911
||.|||||.||.|||||||||||.||.||.||.||||||||.||.||.||
BPUM_0380___y 865 GCCATTACATCGGTTATTGGAGCGGCTTACACGTCTGTTTCCTTCTTTAA 914
BSNT_00712___ 912 GACCTTTTCTCCAAAAATTGAAAAGAATTCACGCGGTATTATTATCGGAT 961
.|||||.||.|||||||||||..|.|||..|||.||.|||||.|||||.|
BPUM_0380___y 915 AACCTTCTCACCAAAAATTGAGCAAAATCAACGTGGCATTATCATCGGTT 964
BSNT_00712___ 962 TTATTGTGGTTTCTAC-GTTAGCTTTTGTCACAATCGGCCAGCCTGCGAA 1010
||||||...|.||.|| .||.| |||||||||.||.||.|..||||.|||
BPUM_0380___y 965 TTATTGCTCTCTCGACTATTTG-TTTTGTCACGATTGGACGACCTGTGAA 1013
BSNT_00712___ 1011 GATCCTCGTCCTTGTCG----GTTCACTGAACGGCTTAATTCTGCCGATT 1056
.||..|.||..|.||.| |.|||.||.| ||.|||.|.||..|.
BPUM_0380___y 1014 CATATTAGTTTTAGTTGGGGCGATCAATGCA----TTGATTTTACCTCTC 1059
BSNT_00712___ 1057 GCGCTCGGAACGCTGCTTGTTGCCGCCTACAAGAAAAACATTGTCGGTGA 1106
||.||.||.||..||||.||.||.||.||.||||||.||||||||||.||
BPUM_0380___y 1060 GCACTTGGCACCTTGCTGGTAGCGGCTTATAAGAAAGACATTGTCGGGGA 1109
BSNT_00712___ 1107 TTATAAGCATCC--GCTTTGGCTGACAAGCA-CAGGCGCGCTTGTAGTGA 1153
||||...||||| .|||| .|||| ||.| |||||||..||||.||..
BPUM_0380___y 1110 TTATCGACATCCATTCTTT--TTGAC-AGTATCAGGCGCATTTGTCGTTG 1156
BSNT_00712___ 1154 TTGTAATGGCAGTTATGGGAATCTACACGTTAATTACACAACTTCCTCAA 1203
|..|.||||||.|.|||||....||.||..|.||.|...||.||||..||
BPUM_0380___y 1157 TCATCATGGCATTGATGGGCGGGTATACCATTATCAATGAAATTCCAAAA 1206
BSNT_00712___ 1204 TTGTGGAGCTGA 1215
.|.|||||||||
BPUM_0380___y 1207 CTATGGAGCTGA 1218
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