Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01772 and BPUM_0377

See Amino acid alignment / Visit BSNT_01772 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_01772___yhjA.1.24716.seq
#    -bsequence dna-align/BPUM_0377.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01772___yhjA-BPUM_0377.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01772___yhjA-BPUM_0377.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01772___yhjA
# 2: BPUM_0377
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     188/288 (65.3%)
# Similarity:   188/288 (65.3%)
# Gaps:          36/288 (12.5%)
# Score: 561.5
# 
#
#=======================================

BSNT_01772___      1 ATG----AAAAAAGC--GGTGGCGGTTTTGCTGTCACTCGGTCTCGTTTT     44
                     |||    ||||||.|  |||.||.||.|   ||||..|.||||   ||||
BPUM_0377          1 ATGTTGAAAAAAATCATGGTAGCTGTCT---TGTCCTTAGGTC---TTTT     44

BSNT_01772___     45 ------CGGTTTTTCATACGGAGCTGA---CCATGTGGCGGAAGCCAAAA     85
                           ||   ||.||.|   ||..||   |||....||.||.||.||||
BPUM_0377         45 ACTAAGCG---TTACACA---AGTCGACACCCACACTGCAGATGCAAAAA     88

BSNT_01772___     86 CAAAGGTGAAGGTCTATAAGAACTGCAAGGAGTTAAACAAAGTATACAAA    135
                     ||   ||.|||..|||.||.||||||||.|.|.|.||||||||.||.|||
BPUM_0377         89 CA---GTCAAGTCCTACAAAAACTGCAAAGCGCTGAACAAAGTCTATAAA    135

BSNT_01772___    136 GGCGGAGTGGC---CCGCACTTCGAAGGCGAAAAACAAAGGCGGAAAAAC    182
                     |||||.|||||   ..|||   ..||..||||||||||||||||.|||||
BPUM_0377        136 GGCGGCGTGGCAAAAAGCA---AAAACACGAAAAACAAAGGCGGCAAAAC    182

BSNT_01772___    183 AAAGTACAAGCCTTACGTCTCTAAGGACCTTTATGATGCCAATAAAAACA    232
                     |||.||||||||.||.|..||.||.|..||||||..|...|||||..||.
BPUM_0377        183 AAAATACAAGCCGTATGCATCAAAAGCACTTTATCTTAAAAATAAGCACC    232

BSNT_01772___    233 AAGACCGCGATAAAGATCTTATCGCCTGTGAACGGTAA    270
                     ..|||||.||||||||....||.||.||||||||.|||
BPUM_0377        233 TTGACCGTGATAAAGACGGCATTGCATGTGAACGCTAA    270


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