Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00692 and BPUM_0367

See Amino acid alignment / Visit BSNT_00692 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:28
# Commandline: needle
#    -asequence dna-align/BSNT_00692___ycnI.1.24716.seq
#    -bsequence dna-align/BPUM_0367___ycnI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00692___ycnI-BPUM_0367___ycnI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00692___ycnI-BPUM_0367___ycnI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00692___ycnI
# 2: BPUM_0367___ycnI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity:     406/690 (58.8%)
# Similarity:   406/690 (58.8%)
# Gaps:         150/690 (21.7%)
# Score: 1165.5
# 
#
#=======================================

BSNT_00692___      1 TTGTTGAAAAAAATCGCATTGACACTATGTCCGGCTA-------------     37
                        .||||||||             |||||     ||             
BPUM_0367___y      1 ---ATGAAAAAA-------------TATGT-----TAAAGCTTTATTACC     29

BSNT_00692___     38 -----TTGTCGGCTCCCTCTTATTCTTTACGGC---CCCTGCCAGCGCGC     79
                          ||.|||..||..|.|||||      |||   .||||..||.||||
BPUM_0367___y     30 AATGCTTCTCGCTTCATTTTTATT------GGCGATTCCTGTGAGTGCGC     73

BSNT_00692___     80 ATGTTTCTGTAAAACCGGCTGAGTCTGCTGCAGGCTCTTGGGAAACGTAT    129
                     |.||..|.||.|||||||.|...|||||..||....|.||||||||.||.
BPUM_0367___y     74 ACGTCACGGTTAAACCGGATACATCTGCGACAAATGCGTGGGAAACATAC    123

BSNT_00692___    130 ACAATAAAGGTTCCTTCAGAGA---AAAATCTGCCGACAACGAAGGTTGT    176
                     ||..|.||.||.|||||.||.|   |.|.|   ||.|||||.||||||||
BPUM_0367___y    124 ACGTTGAAAGTACCTTCTGAAAGTGACAGT---CCAACAACAAAGGTTGT    170

BSNT_00692___    177 CCTCAAAATGCCGAAGGATGTTGAATTCCAGCAATATGAGCCAATTCCGG    226
                     |.|||.||||||.||||..||.||||||||||||||.||||||.|.||.|
BPUM_0367___y    171 CATCACAATGCCTAAGGGCGTAGAATTCCAGCAATACGAGCCAGTACCCG    220

BSNT_00692___    227 GCTGGAAGGTTTCCACTCAAAAACATGATGACAAATCAGTGTC---CGTG    273
                     |||||||....||.|||.||.||.|.||||.|||   .|||.|   .||.
BPUM_0367___y    221 GCTGGAAAACGTCAACTGAAGAAAAAGATGGCAA---GGTGACAAGAGTA    267

BSNT_00692___    274 ACATGGGAGGCGACTGACGG----AGGCATTCAGGAAGGACAGTTCCAGC    319
                     ||.|||||.||    .||||    ||||.|.|..|..|||||||||||||
BPUM_0367___y    268 ACTTGGGAAGC----AACGGGTAAAGGCGTGCTTGCCGGACAGTTCCAGC    313

BSNT_00692___    320 A----GTTTACCTTTGTTGCCAAAAACCCTGACAAAGCGGAGGAAGCTGC    365
                     |    |||    |||||.||.|||||||||||.|||||.|..||||||||
BPUM_0367___y    314 AATTCGTT----TTTGTAGCGAAAAACCCTGAAAAAGCAGGCGAAGCTGC    359

BSNT_00692___    366 TTGGGACGCATACCAATATTACAAAGACGGCAGCATTGTTGAGTGGACAG    415
                     .|||||.|||||.||||||||.||.||.||.|...|.|||||.|||||.|
BPUM_0367___y    360 ATGGGATGCATATCAATATTATAAGGATGGAACGGTCGTTGAATGGACTG    409

BSNT_00692___    416 GTGACGAGGATGCCGATACACCTCATTCCATTACAAACA---TCACGTCT    462
                     |.||..|.||.||.||||..||.|||||.||.|||||||   ||.|.|||
BPUM_0367___y    410 GCGATAAAGAGGCTGATAAGCCGCATTCAATCACAAACATTGTCGCCTCT    459

BSNT_00692___    463 GCAAAACAAGTGACAGATGAGCACGGGGCCACGAAAA--------CAGAA    504
                       ||.|| .||.||.|||  .|.|..||.||.|||||        .||||
BPUM_0367___y    460 --AATAC-GGTAACGGAT--TCCCATGGTCAAGAAAAACCTAAAGAAGAA    504

BSNT_00692___    505 GACGATTCCGAAA---ACTCAGGTTCTTCAGCTCTAAACATTACAGCGAT    551
                     .|.|..||.||||   .|||...||||||            |.||.|..|
BPUM_0367___y    505 AAGGCATCAGAAACAGCCTCCAATTCTTC------------TTCACCACT    542

BSNT_00692___    552 TGTGC------TGTC---TGCAGCTGCCATTATTTTATCTGTAGCA----    588
                     |||||      ||||   |||.|||    .||.|||     |||||    
BPUM_0367___y    543 TGTGCTAGGGTTGTCCATTGCTGCT----CTAGTTT-----TAGCACTCA    583

BSNT_00692___    589 --GCACTTG--------TTAAGAAAAAGCGTGCGTAA---    615
                       ||.||||        ||.|||||||        ||   
BPUM_0367___y    584 TTGCGCTTGGGCTTGCTTTTAGAAAAA--------AATAA    615


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.