Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00687 and BPUM_0364
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:28
# Commandline: needle
# -asequence dna-align/BSNT_00687___gabD.1.24716.seq
# -bsequence dna-align/BPUM_0364___gabD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00687___gabD-BPUM_0364___gabD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00687___gabD-BPUM_0364___gabD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00687___gabD
# 2: BPUM_0364___gabD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1455
# Identity: 1008/1455 (69.3%)
# Similarity: 1008/1455 (69.3%)
# Gaps: 126/1455 ( 8.7%)
# Score: 3354.0
#
#
#=======================================
BSNT_00687___ 1 ATGCCAGATCAATTAACGGTCTACAACCCGGCTACGGGCGAGGAGA---- 46
|||.||.|..||.|.|..||.||.||.||.||.||.||.||.||.|
BPUM_0364___g 1 ATGACAAACGAACTCAAAGTGTATAATCCTGCAACAGGGGAAGAAATTGC 50
BSNT_00687___ 47 -TCAAAACGATTCCTCAGCAATCAGCCAAAG---AAGTAGAAGAAGCCAT 92
||| .||.|||||||..|| |||| ||.|.|||||.|||||
BPUM_0364___g 51 TTCA-----GTTGCTCAGCATACA---AAAGAACAAATTGAAGACGCCAT 92
BSNT_00687___ 93 TGAACGTTCACATCAAGCGTTTAAAACGTGGTCTAAAACATCAGCGAACG 142
|...||.|||||||||||.||.|||.|.|||.|.|||||.||||||.|.|
BPUM_0364___g 93 TTCGCGCTCACATCAAGCATTCAAAGCATGGGCAAAAACGTCAGCGCATG 142
BSNT_00687___ 143 AAAGAGC--GTCTCTTTTGAAAAAATGGTATGAGCTGATTGTTGAACATA 190
||.|.|| .|.||.||.| .||.||||.|||.||.||..|||||||||
BPUM_0364___g 143 AACGTGCCAATATCATTCG--CAAGTGGTTTGATCTCATGATTGAACATA 190
BSNT_00687___ 191 AAGAAGAACTTGCAGATTTAATTACAAAGGAAAACGGAAAACCTTACCAG 240
|||||...||.|||.|..|.||.||.||.||.|||||.||.||.||.||.
BPUM_0364___g 191 AAGAAAGGCTCGCAAAAATCATCACGAAAGAGAACGGGAAGCCATATCAA 240
BSNT_00687___ 241 GAAGCAGTCGGCGAGGTACTTTACGGTGCAGGCTATATTGAATGGTTCGC 290
||||||.|.||.||..|..||||.|..||.||.|||||.|||||||.|||
BPUM_0364___g 241 GAAGCATTAGGGGAAATCGTTTATGCAGCTGGATATATAGAATGGTACGC 290
BSNT_00687___ 291 AGAAGAAGCGAAGCGTGTGTACGGAAGAACGGTCCCGGCCC---CGAC-A 336
|||.|||||.||.|||.|.||.||.|||||..|.|||.|.| |||| |
BPUM_0364___g 291 AGAGGAAGCCAAACGTATCTATGGTAGAACCATTCCGTCACATACGACGA 340
BSNT_00687___ 337 ACGGGTAAACGAATTGTTGTCACACGCCAGCCGGTCGGCCCCGTTGCAGC 386
|| |||||..||.||||||||...|||||.||.||.||.|||||.||
BPUM_0364___g 341 AC----AAACGCCTTTTTGTCACAAAGCAGCCAGTTGGACCTGTTGCGGC 386
BSNT_00687___ 387 TATCACGCCCTGGAATTTCCC-GAATGCGATGATTACACGCAAAGCGGCG 435
.||.||.||.||||||||||| |.| ||.|||||.||..|.||.||.||.
BPUM_0364___g 387 CATTACACCGTGGAATTTCCCAGCA-GCCATGATCACGAGAAAGGCAGCA 435
BSNT_00687___ 436 CCTGCTCTTGCCGCTGGCTGTACATTTATCATCAAGCCGGCGCCGGACAC 485
||.||.|||||.||.||||||||.|||||..|.|||||.||....|||||
BPUM_0364___g 436 CCAGCACTTGCAGCGGGCTGTACCTTTATTGTGAAGCCTGCTGAAGACAC 485
BSNT_00687___ 486 ACCGCTGTCTGCTTATGAACT------AGCACGCCTCGCATATGAAGCGG 529
.||||||.|.|||..|||||| |..|.||| |.|||||.|
BPUM_0364___g 486 GCCGCTGACGGCTATTGAACTTGTGAAATTAGGCC------ACGAAGCCG 529
BSNT_00687___ 530 GCATTCCGAAGGATGTTCTTCA--GGTTGTAATCGGCGATGGAGAAGAAA 577
|.||.||..||||||..||.|| || ||.|||||.||||||.|||||.
BPUM_0364___g 530 GAATCCCAGAGGATGCCCTGCAATGG--GTGATCGGAGATGGAAAAGAAG 577
BSNT_00687___ 578 TCG--GAAATGTGTTCACAAGCAGTCCGAAAATCCGCAAAATCACGTTCA 625
||| |||| |.||||||...||.||....||.|||||||||||.||||
BPUM_0364___g 578 TCGGTGAAA--TATTCACAGATAGCCCACTGATTCGCAAAATCACATTCA 625
BSNT_00687___ 626 CAGGCTCAACACCTGTAGGGAAAATCCTT--ATGAAAAACAGCGC--GGA 671
||||||||||.||.||.|| |||.|.|| ||.||||||||.|| |.|
BPUM_0364___g 626 CAGGCTCAACGCCAGTCGG--AAAGCATTTGATCAAAAACAGTGCAAGTA 673
BSNT_00687___ 672 CACCGTGAAGCACGTCTCAATGGAGCTCGGCGGACACGCCCCGCTGATCG 721
|| ||.|||||.||.|||||||||||.||.||.||.||||||||.||||
BPUM_0364___g 674 CA--GTTAAGCATGTATCAATGGAGCTTGGTGGTCATGCCCCGCTCATCG 721
BSNT_00687___ 722 TAGATGAAGATGCAGACATTGACCTTGCCGTTGAACAGGCGATGGCGTCC 771
||||..|||||||..|..||||.||.||.||..||||.||.|||||.||.
BPUM_0364___g 722 TAGACAAAGATGCCAATCTTGAACTAGCTGTCAAACAAGCAATGGCATCT 771
BSNT_00687___ 772 AAATACCGAAACGCCGGCCAAACCTGCGTATGTGCCAACCGCCTGATCGT 821
||.|.|||.||.||.||.||||||||.||.||||||||||||.|.||.||
BPUM_0364___g 772 AAGTTCCGTAATGCAGGACAAACCTGTGTCTGTGCCAACCGCTTAATTGT 821
BSNT_00687___ 822 TCATGAATCCATCAAGGATGAATTTGCTGCGAAACTGAGCGAGCAAGTGT 871
.||||||..|||..|.||.|.||||||| |||||.|
BPUM_0364___g 822 GCATGAAGACATTCATGAAGCATTTGCT---------------CAAGTCT 856
BSNT_00687___ 872 CT---------------AAGCTGAGAGTCGGAAATGGACTTGAGGAAGG- 905
.| |||||||.|||.||||||||..||||.|||||
BPUM_0364___g 857 TTAGCAAAGAGGTCGAAAAGCTGAAAGTGGGAAATGGCTTTGAAGAAGGC 906
BSNT_00687___ 906 -CGTCAATGTCGGACCGATCATCAATAAACGAGGCTTTGAAAAAATCGTC 954
|.||.| ||||.||.||.|||||.||.||.||||||||.|||||.|||
BPUM_0364___g 907 ACATCCA--TCGGCCCAATTATCAACAAGCGCGGCTTTGATAAAATTGTC 954
BSNT_00687___ 955 AGCCAAATAGATGATGCGGTTGAAAAAGGCGCGAAAGTGATTGCTGGGGG 1004
||||||||..|.|||||.||.||.|||||.||||||.|..||| |.||.|
BPUM_0364___g 955 AGCCAAATTCAAGATGCAGTCGATAAAGGGGCGAAAATCCTTG-TCGGCG 1003
BSNT_00687___ 1005 CACATATGACCGAA-----ACGATGACAAAGGGTGCTACTTTGTGAATCC 1049
.|.||| ||.| |.||||||||...||..||.|||||..|.||
BPUM_0364___g 1004 GAGATA----CGCATTTCGATGATGACAAGTCGTATTATTTTGTCCAGCC 1049
BSNT_00687___ 1050 GACAGTGCTCACCGATGTCGATACGTCCATGAACATCATGCATGAGGAAA 1099
.||.||.|||||..||||.||..|.||||||||||||||||||||.||||
BPUM_0364___g 1050 AACTGTTCTCACACATGTAGACCCTTCCATGAACATCATGCATGAAGAAA 1099
BSNT_00687___ 1100 CATTCGGCCCGGTCGCCCCGAT--CGTCACGTTTTCTGATA----TTGAT 1143
|.||.||.||.||.||.||||| || |||| |.|.| |.|||
BPUM_0364___g 1100 CCTTTGGTCCAGTGGCACCGATTACG--ACGT----TCAAAACACTAGAT 1143
BSNT_00687___ 1144 GAAGCGATTCAGCTTGCCAACGATACACCGTATGG-CTTGGCTGCTTACT 1192
|||||.|||.|..|.||.||.||.|||||.|.||| ||| ||.|||||.|
BPUM_0364___g 1144 GAAGCAATTGAATTAGCGAATGACACACCTTTTGGTCTT-GCAGCTTATT 1192
BSNT_00687___ 1193 TCTTCACAGAAAACTACCGCCGCGGCATCTATATTTCCGAGAATCTAGAG 1242
||||.||||||||.||.||...||||.||||.|||||.||||||||.||.
BPUM_0364___g 1193 TCTTTACAGAAAATTATCGAAACGGCCTCTACATTTCAGAGAATCTCGAT 1242
BSNT_00687___ 1243 TATGGCATTATCGGCTGGAATGACGGCGGACCGTCAGCGGTTCAAGCGCC 1292
|||||.|||||.|||||||||||.||.||.||.||.||.||.|||||.||
BPUM_0364___g 1243 TATGGGATTATTGGCTGGAATGATGGGGGTCCATCGGCTGTCCAAGCACC 1292
BSNT_00687___ 1293 ATTCGGCGGAATGAAAGAAAGCGGCATTGGCCGTGAAGGCGGTTCA--GA 1340
||||||.|||||||||||||||||.||||||||||||||||| || ||
BPUM_0364___g 1293 ATTCGGAGGAATGAAAGAAAGCGGAATTGGCCGTGAAGGCGG--CATCGA 1340
BSNT_00687___ 1341 AGGTATCGAGCCGTACCTTGAAACAAAATATTTGTCCATCGGTTTATAA- 1389
|||.|||||.||.||..|.|||||.||||||.|.||.||.||||||.|.
BPUM_0364___g 1341 AGGGATCGAACCTTATTTAGAAACCAAATATGTATCTATTGGTTTAGACG 1390
BSNT_00687___ 1389 ----- 1389
BPUM_0364___g 1391 AATAG 1395
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