Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00679 and BPUM_0357
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00679___ycnB.1.24716.seq
# -bsequence dna-align/BPUM_0357___ycnB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00679___ycnB-BPUM_0357___ycnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00679___ycnB-BPUM_0357___ycnB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00679___ycnB
# 2: BPUM_0357___ycnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1530
# Identity: 983/1530 (64.2%)
# Similarity: 983/1530 (64.2%)
# Gaps: 207/1530 (13.5%)
# Score: 2983.0
#
#
#=======================================
BSNT_00679___ 1 TTGAACACAAGTATTGAACAAAAAC--CTTTTAACCGTTCTGTCATTGTC 48
|.|.||..|.|.|.||| |.|.|||.||.|||||.|||||.
BPUM_0357___y 1 --------ATGAATCAATCTACAACATCGTATAATCGATCTGTGATTGTG 42
BSNT_00679___ 49 GGCATTTT----GTTAGCCGGAGCGTTTGTGGCGATTTTGAACCAGACAT 94
||.||||| ||| ||.||.||.||.||.|||||.|||||.||||
BPUM_0357___y 43 GGGATTTTCCTCGTT----GGGGCATTCGTTGCCATTTTAAACCAAACAT 88
BSNT_00679___ 95 TGTTGATTACCGCACTTCCCCATATCATGAGGGATTTCAATGTCGATGCC 144
||.|||||.|.||..|.||.|||||||||..|||.||||||.|.||||.|
BPUM_0357___y 89 TGCTGATTCCAGCGATCCCACATATCATGGAGGAATTCAATATTGATGTC 138
BSNT_00679___ 145 AACCAAGCACAATGGCTGACCACATCATTTATGTTAACCAATGGGATTTT 194
|.|.|||.|||.|||||.||||||.|.||||||.|.||.||.|||||..|
BPUM_0357___y 139 AGCAAAGGACAGTGGCTCACCACAGCCTTTATGCTGACAAACGGGATCCT 188
BSNT_00679___ 195 AATTCCGATTACCGCGTTTTTAATTGAGAAATTCACAAGCCGGGCGCTGC 244
.||.|||||.||.||.||.|||||.||||||||..|.|||||..|..|..
BPUM_0357___y 189 CATCCCGATCACGGCTTTCTTAATCGAGAAATTTTCTAGCCGTTCTTTAG 238
BSNT_00679___ 245 TCATCACAGCAATGAGCATTTTCACTGCCGG-AACAGTCGTCGGAGCGTT 293
|..|.|||||..|.|||||.||.||.||||| |.||.||.| || ||
BPUM_0357___y 239 TTTTAACAGCGCTTAGCATCTTTACAGCCGGTACCATTCTT----GC-TT 283
BSNT_00679___ 294 C----GCGCCGAACTTCCCGGTTCTGCTGACAGCGCGTATCATTCAAGCG 339
| ||..||||.|||||.||..|.||..|||||||||||.|.||.||.
BPUM_0357___y 284 CATTTGCAACGAATTTCCCTGTATTACTTGCAGCGCGTATCGTGCAGGCA 333
BSNT_00679___ 340 GCTGGAGCCGGCATTATGATGCCGCTCATGCAGACTGTATTCCTGACAAT 389
||.||.||.||.|||.|.||||||||.|||||.||..|.||..|.||.||
BPUM_0357___y 334 GCCGGCGCAGGGATTTTAATGCCGCTGATGCAAACGATCTTTTTAACCAT 383
BSNT_00679___ 390 CTTTCCGATTGAAAAGCGCGGCCAGGCTATGGGTATGGTCGGATTGGTCA 439
.||.||||..|||||.||.||.|||||.|||||||||||||||.|.||||
BPUM_0357___y 384 TTTCCCGAAAGAAAAACGTGGTCAGGCAATGGGTATGGTCGGACTTGTCA 433
BSNT_00679___ 440 TCTCATTCGCGCCTGCGATCGGACCGACTCTTTCCGGATGGGCTGTCGAA 489
|.||.|||||.||.||..|.|||||.||.|||..|||.|||..|||.||.
BPUM_0357___y 434 TATCTTTCGCACCAGCTCTTGGACCAACACTTGGCGGCTGGATTGTTGAT 483
BSNT_00679___ 490 GCTTTC-TCTTGGAGATCATTGTTTTATATTATTCTACCGTTTGCTGTGA 538
.|.||| .||.|.||.|| |||||.||||||.||||.||..|.|.|.|.|
BPUM_0357___y 484 TCCTTCAGCTGGAAGTTC-TTGTTCTATATTGTTCTGCCAATCGGTATCA 532
BSNT_00679___ 539 TTGATTTGATTCTTGCCAGCATCCTGATGAAAAACGTGACG----ACTTT 584
|||||.|.||||||||...|.||.|.||||||||.||.||| |
BPUM_0357___y 533 TTGATCTCATTCTTGCTTTCTTCTTAATGAAAAATGTAACGCAGCA---- 578
BSNT_00679___ 585 AAGAAAAACACAGATTGATATTTTATCAGTCATCCTTTCAACATTTGGGT 634
||||.||||||..||||||.|.||||||||||||.|.||..|.||.||.|
BPUM_0357___y 579 AAGAGAAACACGAATTGATGTGTTATCAGTCATCTTGTCGTCCTTCGGTT 628
BSNT_00679___ 635 TCGGCGGCCTTCTGTACGGCTTCTCAAGCGTCGGCTCTTACGGCTGGTCC 684
|||||||.||.||.|||||.||.||.||.||.|||.|.||.||||||.|.
BPUM_0357___y 629 TCGGCGGACTGCTTTACGGATTTTCTAGTGTTGGCACATATGGCTGGACG 678
BSNT_00679___ 685 AGTTCAACCGTCTTGATTTCACTGCTGGTGGG---TGTCATCGCGC-TGC 730
||..|.||.|||.|.|||||.|||.|.||.|| ||| |.|| ||.
BPUM_0357___y 679 AGCGCCACTGTCCTCATTTCGCTGATTGTCGGCGCTGT----GAGCTTGT 724
BSNT_00679___ 731 TCTTGTTTAT----CACAAGACAAATGAAGCTTGA-AAAACCGATGCTGG 775
||||.||||| |...||.|.||| |||| ||.|||||||||.|
BPUM_0357___y 725 TCTTCTTTATTCTGCGTCAGTCGAAT-----TTGACAAGACCGATGCTTG 769
BSNT_00679___ 776 AATTCCGCGTCTTCACGTTTGGCG-TTTTCAGCTTAACAACACTGCTGGG 824
|.||..|||||||.|.|||| ||| |.||.||||||||.||..|.||.||
BPUM_0357___y 770 AGTTTGGCGTCTTTAAGTTT-GCGATCTTTAGCTTAACGACCTTCCTTGG 818
BSNT_00679___ 825 AACCCTCGTCTTTGCATTATTGATCGGTACGGAAACCATCCTGCCGCTTT 874
.|..||.||.|||||.||||||||.||.||.||.||.||..|||||||.|
BPUM_0357___y 819 GATGCTTGTTTTTGCTTTATTGATTGGGACAGAGACGATTTTGCCGCTCT 868
BSNT_00679___ 875 ATACACAAAATGTCAGAGACGTCACAGCTTTTGATACAGGGCTTATGCTC 924
||||.||||||||.||||...|..|.|||.|||||||||||||.|| ||.
BPUM_0357___y 869 ATACGCAAAATGTGAGAGGATTGTCTGCTCTTGATACAGGGCTGAT-CTT 917
BSNT_00679___ 925 CTT-CCGGGAGCCGTTGTGATGGGCTTTATGTCGCCGATTATCGGCAGAA 973
.|| ||.||.||..|..|.|||||..|..|.||.||.|||||.||..|.|
BPUM_0357___y 918 ATTGCCTGGTGCACTCTTTATGGGGCTCCTCTCACCAATTATTGGACGGA 967
BSNT_00679___ 974 TTTTTGACCGTGTCGGCGGAAGAGGGCTGGCGATT--GCCGGTTTCTGCA 1021
|||||||....||||||||||.||||||||| ||| ||.||||| |
BPUM_0357___y 968 TTTTTGATAAAGTCGGCGGAAAAGGGCTGGC-ATTAGGCGGGTTT----A 1012
BSNT_00679___ 1022 TCAT-CTT--CCTGAC-ATCTCTGCCGTTTATGCAGCTGAC---TGA--- 1061
..|| ||| |.|||| |.|| ||||.|||||||.|||.|| |||
BPUM_0357___y 1013 CGATACTTACCGTGACGACCT-TGCCATTTATGCTGCTCACCCTTGATTC 1061
BSNT_00679___ 1062 --CCATACGTCACTCGCTTGGATT---GTCGTTTTATACACCGTTCG--- 1103
|||| || |.||| ||| ||||.| |||||..||||
BPUM_0357___y 1062 ATCCAT-CG-CCCTC------ATTACAGTCGCT---TACACACTTCGCTT 1100
BSNT_00679___ 1104 --TC--TCTTAGGCACCGCCATGATCATGATGCCGGTGACAACAGCCGGA 1149
|| |.||.|| |||||||||||||||.||||||||||.||.
BPUM_0357___y 1101 GATCGGTGTTGGG-------ATGATCATGATGCCGCTGACAACAGCAGGT 1143
BSNT_00679___ 1150 ATCAACGCGCTGCCGCGCCACTTGATTCCGCACGGAACTGCGATGAACAA 1199
||.|||.|..|.||||..||.|||||.|||||.||.||.||||||||.||
BPUM_0357___y 1144 ATTAACTCTTTACCGCCTCATTTGATCCCGCATGGGACAGCGATGAATAA 1193
BSNT_00679___ 1200 CACGATTCGCCAAGTCGGCGGCTCGATCGGAACCGCACTATTGGTTTCCG 1249
||||||..|.|||.|.||.||.||.||.||.||.||..|..|.||.|||.
BPUM_0357___y 1194 CACGATGAGACAAATGGGTGGTTCCATTGGGACAGCTGTGCTTGTCTCCA 1243
BSNT_00679___ 1250 TGATGAGCAACCAGGCCGCACATGCAGGCACGACAAATGTGAAGCACGCT 1299
|.|||||||.|...||.|||.|||||| ||.||...||| |.||
BPUM_0357___y 1244 TCATGAGCAGCTCTGCTGCAAATGCAG-------AATTGGCCAGC-CCCT 1285
BSNT_00679___ 1300 --------GCCCTGCACGGCATGA--ACGCC--GCTTTTATTGTGG-CTG 1336
|||.|.||.||.|||| |||.| .|||...||.||| |||
BPUM_0357___y 1286 TAAAATCAGCCGTTCATGGAATGAATACGTCATTCTTCATTTCTGGTCTG 1335
BSNT_00679___ 1337 CCGTCATTGCA---CTTGTCGGCTTCCTTCTCTCATTCACATTAAA-GAA 1382
||.||| |||| ||| ||.|.|||||.||....||||| |||
BPUM_0357___y 1336 -----ATCGCAGTCCTTG--GGC-TCGTCCTCTCCTTTTTCTTAAAGGAA 1377
BSNT_00679___ 1383 ACCTCAGCGCCCTGCCGAACAGCAGCCGGCACGCTAA------------- 1419
| ||| ||| |..||||
BPUM_0357___y 1378 A----------------AAC-GCA------ATTCTAAAGTGATGAAGCAG 1404
BSNT_00679___ 1419 ------------------------------ 1419
BPUM_0357___y 1405 GAGTTATCTTCCTCCTCCTCTTCTTCATAA 1434
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