Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06058 and BPUM_0349

See Amino acid alignment / Visit BSNT_06058 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:36
# Commandline: needle
#    -asequence dna-align/BSNT_06058___yxeO.1.24716.seq
#    -bsequence dna-align/BPUM_0349___yxeO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06058___yxeO-BPUM_0349___yxeO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06058___yxeO-BPUM_0349___yxeO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06058___yxeO
# 2: BPUM_0349___yxeO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 784
# Identity:     556/784 (70.9%)
# Similarity:   556/784 (70.9%)
# Gaps:          71/784 ( 9.1%)
# Score: 1926.5
# 
#
#=======================================

BSNT_06058___      1 TTGAT-------AACAGT---AAAAAAT-ATTCGCAAAGCGTTTAAAGAT     39
                     .||||       |.||.|   ||.|||| |||||    ||       ||.
BPUM_0349___y      1 ATGATCAAGCTCACCAATTTGAAGAAATCATTCG----GC-------GAC     39

BSNT_06058___     40 CTCGTCGTGCTCGACGGAATCGATCTAGAAGTG--AAACGCGGAGAAGTG     87
                     ||.|||||..|.|||||||||.||||.||.|||  |||.|.|.||  ||.
BPUM_0349___y     40 CTTGTCGTCTTAGACGGAATCAATCTTGACGTGCAAAAAGGGCAG--GTT     87

BSNT_06058___     88 GTGGCAATCATCGGTCCGTCCGGTTCCGGAAAATCAACGCTTCTCCGGTG    137
                     |||||.||.|||||.||.||.||.|||||.|||||.||..|.||.||.||
BPUM_0349___y     88 GTGGCCATTATCGGACCTTCTGGCTCCGGTAAATCCACTTTGCTGCGCTG    137

BSNT_06058___    138 CTTAAATTTATTAGAGCGTCCGGATCAAGG-ACTTATTGAAATCGGAGAA    186
                     |||||||||||||||....||.|||.|||| || .||||||||.||.||.
BPUM_0349___y    138 CTTAAATTTATTAGAAATACCAGATGAAGGCAC-GATTGAAATTGGCGAT    186

BSNT_06058___    187 GCCAAACTGAACGCGGAAAAGTTTACACGCAAGGAAGCATATCGGCTTCG    236
                     ||.||.||..|.|||...||.|.||||||.||.|||||..|||..||.||
BPUM_0349___y    187 GCGAAGCTCGATGCGTCTAAATATACACGAAAAGAAGCCCATCACCTGCG    236

BSNT_06058___    237 CCAGCAAACGGCCATGGTCTTTCAAAACTACAATCTGTTTAAAAATAAAA    286
                     .||.|||||.||.|||||.|||||||||||.|||.||||||||||.||.|
BPUM_0349___y    237 TCAACAAACAGCTATGGTGTTTCAAAACTATAATTTGTTTAAAAACAAGA    286

BSNT_06058___    287 CGGCTCTGCAAAACATTACAGAA-----GCTTTAATCGTGGCTCAACATA    331
                     |.||.||||||||.|||||||||     ||||     |||.|..||.|.|
BPUM_0349___y    287 CAGCACTGCAAAATATTACAGAATCACTGCTT-----GTGACGAAAAAAA    331

BSNT_06058___    332 AACCACGCGACGAAGCGAAACG-------TATTGGAATGGAGATTCTGAA    374
                            .||||||||.|.|.|       .|||||||||.||.|.||.||
BPUM_0349___y    332 -------TGACGAAGCAACAGGCAAATGAGATTGGAATGAAGCTGCTAAA    374

BSNT_06058___    375 ACAAGTCGGTCTGGAGCATAAGGCTGACAGCTATCCGATCACAATGTCCG    424
                     .||.||.||..|.|||||.|||||||||||||||||..||||..|.||.|
BPUM_0349___y    375 GCAGGTAGGATTAGAGCAAAAGGCTGACAGCTATCCAGTCACGTTATCTG    424

BSNT_06058___    425 GCGGCCAGCAGCAGCGAATCGGCATCGCCCGGGCGCTTGCGGTCAATCCG    474
                     ||||.|||||||||||||||||.||.|||||.||..|.|||||..||||.
BPUM_0349___y    425 GCGGACAGCAGCAGCGAATCGGGATTGCCCGCGCATTAGCGGTTGATCCA    474

BSNT_06058___    475 CATGCGATTTTGCTGGATGAACCAACTTCAGCGCTTGACCCTGAGCTCGT    524
                     |||||||||||.||.|||||||||||.||.||.|||||.||.|||||.||
BPUM_0349___y    475 CATGCGATTTTACTCGATGAACCAACATCGGCACTTGATCCAGAGCTTGT    524

BSNT_06058___    525 CACAGGGGTGCTTCAGGTCATCAAGTCCATTGCGGAA---AAGCAAACAA    571
                     ..|.||.||||||||.||.||.||.||||||||  .|   ||| ||||||
BPUM_0349___y    525 ATCGGGTGTGCTTCAAGTGATTAAATCCATTGC--CATCCAAG-AAACAA    571

BSNT_06058___    572 CGATGATCATTGTTACACACGAAATGGCGTTTGCAAAAGAGGTCGCTGAT    621
                     ||||||||||.||.|||||.||||||||||||||||.|||.||.||.||.
BPUM_0349___y    572 CGATGATCATCGTGACACATGAAATGGCGTTTGCAAGAGAAGTAGCAGAC    621

BSNT_06058___    622 AAAGTGATTTTTATGGCAGACGGCCATATTATCGAGCAGGGAACGCCAAA    671
                     .|.||||||||.||||||||.||.||||||||.||.|||||.||.||||.
BPUM_0349___y    622 CATGTGATTTTCATGGCAGATGGTCATATTATTGAACAGGGCACACCAAC    671

BSNT_06058___    672 AGAACTGTTTGACCATCCGAAAAACGAACGGACGAAACGATTTATC----    717
                     .||..|.|||||..|..||||.||.|||||.||.||||||||||||    
BPUM_0349___y    672 TGAGTTATTTGATGAAACGAAGAATGAACGAACAAAACGATTTATCCAAA    721

BSNT_06058___    718 AAGCAGGTGGGAGAGCCTGCAG-AGCTTATATAA    750
                     |||.|    |.||.|.|||.|| |||    ||||
BPUM_0349___y    722 AAGAA----GCAGCGGCTGAAGAAGC----ATAA    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06058 and BPUM_0349

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
