Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06061 and BPUM_0346
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06061___yxeL.1.24716.seq
# -bsequence dna-align/BPUM_0346___yxeL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06061___yxeL-BPUM_0346___yxeL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06061___yxeL-BPUM_0346___yxeL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06061___yxeL
# 2: BPUM_0346___yxeL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 542
# Identity: 344/542 (63.5%)
# Similarity: 344/542 (63.5%)
# Gaps: 82/542 (15.1%)
# Score: 999.0
#
#
#=======================================
BSNT_06061___ 1 -----ATGAAGCCACA-ATATCGCCTTGCAGTTGAACGTGATGCCGA--- 41
|| ||| .|.|||.||.|| ||| .||.||.||
BPUM_0346___y 1 TTGGGAT------ACACGTTTCGTCTGGC-----AAC-AGAGGCAGATAT 38
BSNT_06061___ 42 ACA---GCTCCTCGCGCTGACATTGCGGGCTTATGAACCGATTCGAAAGC 88
|.| |||.||.|..||||||....|.||||||||.||.|||||..|||
BPUM_0346___y 39 AGAGGCGCTGCTTGAACTGACAACAAGAGCTTATGAGCCAATTCGTGAGC 88
BSNT_06061___ 89 TTGGCATTCGTTTTGCTGCCGCTCATGCAGATTTGGATTTGGTGCTGCAA 138
|.|||||.|..||....||.||.|||||.|||||.|.|.|.||.|.|.||
BPUM_0346___y 89 TCGGCATCCAGTTCCAAGCAGCACATGCTGATTTCGCTCTCGTTCAGAAA 138
BSNT_06061___ 139 AATATTCGGGAAAATGCTTGCTACGTCATGGAAGAAGACGG-GCGGATC- 186
|||.|.|...|.|||..||||||.||.|||||||||.|||| |.|..||
BPUM_0346___y 139 AATGTACAAAAGAATCTTTGCTATGTGATGGAAGAAAACGGAGAGCTTCT 188
BSNT_06061___ 187 ATCGCGACCATCACCTTG------AGAATGCCTTGGGGAAAACAGCCGGG 230
||| ||||||| .|.||||||||||||.|||||||.||
BPUM_0346___y 189 ATC--------CACCTTGTCGCTCCGTATGCCTTGGGGAGAACAGCCAGG 230
BSNT_06061___ 231 ACCGTATGGCGTTCCGCATATCTGGTGGTTCG-CTGTGGACC--CCGGCA 277
.||||..||.||.||.||.||.||||||||.| ||..|.||| |||.|
BPUM_0346___y 231 TCCGTTCGGTGTCCCTCACATTTGGTGGTTTGCCTCAGAACCATCCGCC- 279
BSNT_06061___ 278 CCGGTAAAAAAGGAATCGGAACAAAGCTGCT-TCAATGGCTGGA------ 320
||||||||.| .|.||| || || |.||||||
BPUM_0346___y 280 -----AAAAAAGGGA-------CAGGCT-CTATC--TTGCTGGATTGGGT 314
BSNT_06061___ 321 GGAAAC---AATCCTTCGTGATACGTTAAAGGTTCCGTTTGTCTCACTCG 367
|||||| |.|.||..|.|||||.||||||||.||.|..||.||..|.|
BPUM_0346___y 315 GGAAACCGAAGTGCTAAGAGATACCTTAAAGGTGCCATACGTATCTTTAG 364
BSNT_06061___ 368 GAACAGCGGATAAGCATCCGTGGCTGATTGAGATGTACGAACGAAAAGGG 417
|.|||||.|||||||||||||||||.||.||.|||||.||.||.|||||.
BPUM_0346___y 365 GTACAGCTGATAAGCATCCGTGGCTCATAGACATGTATGAGCGCAAAGGC 414
BSNT_06061___ 418 TATGTCCGCTCAGGTGAACAAGACCTTGGCAAAGGGCATATCACAGTCTA 467
||.|||.|..||||.|||.|.||..|.|||||.||.||||||||..|.||
BPUM_0346___y 415 TACGTCAGAGCAGGAGAAAAGGATTTAGGCAAGGGTCATATCACGATTTA 464
BSNT_06061___ 468 TATGAAAAAACAATT--GCGACATGAT---------CTATAA 498
|.|||||||||||.| | |.|| ||| |.||||
BPUM_0346___y 465 TTTGAAAAAACAACTAAG-GTCA-GATATTACACAACCATAA 504
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