Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00656 and BPUM_0344
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00656___yclG.1.24716.seq
# -bsequence dna-align/BPUM_0344___yclG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00656___yclG-BPUM_0344___yclG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00656___yclG-BPUM_0344___yclG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00656___yclG
# 2: BPUM_0344___yclG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2097
# Identity: 1094/2097 (52.2%)
# Similarity: 1094/2097 (52.2%)
# Gaps: 630/2097 (30.0%)
# Score: 2345.5
#
#
#=======================================
BSNT_00656___ 1 ATGGCTGAA---------TTCA---------TATTAAATGCAGC------ 26
|||..|||| ||.| .||||||||.|.|
BPUM_0344___y 1 ATGTGTGAAAAGGAGGAGTTTAGGTTGGGGGAATTAAATGAATCTGATCT 50
BSNT_00656___ 27 ------------------------GGATTTCGGTGTTCCTGG-AGATGGT 51
.|||||.|||| |..||| .|||||.
BPUM_0344___y 51 GAAAAAGCCTGTTGTCAATGTACAAGATTTTGGTG-TGGTGGCGGATGGG 99
BSNT_00656___ 52 AAAACGGATTCGACAGAACG--GATTAATCAGTGCCTCAGTACAGCTGTT 99
||||||||.|..|||| || |.|.|||.|.|| ||.||.|..|
BPUM_0344___y 100 AAAACGGACTGTACAG--CGAAGCTCAATGAATG-CTTAGAATGG----- 141
BSNT_00656___ 100 TCGAAA------GGCTA-TCATACTGTCTGGTTTCCAAAGGGAACATATT 142
.||||| ||.|| ||..|| ||||||.|.||.|..||.||.|||.
BPUM_0344___y 142 ACGAAAGCGCAGGGGTATTCTCAC-GTCTGGCTGCCGAGCGGCACGTATG 190
BSNT_00656___ 143 TAATAGACGCA----ACGCTTGGCGGAGAT----------CTTAATCAGA 178
|.||.||.||| || .|.|||||| ||| ||.|.
BPUM_0344___y 191 TCATCGATGCAGTGTAC----AGAGGAGATCGATTTTTTCCTT--TCCGG 234
BSNT_00656___ 179 GGTTTCGAAACGCGGGGATCATTGTTCCCGGCAA--CCT-TGA-GATTAT 224
||| |||||.||...||| |.||| |.| ||| ||||..
BPUM_0344___y 235 GGT--------GCGGGTATACGTGT----GCCAAGTCATATGACGATTGA 272
BSNT_00656___ 225 GATGGACCCCGAATG-TATCATGAAAGTGATACCGAATAGTTCGTGGGGT 273
||||| |.||..||| ..||||.||.||||||||.|||..|||||||||.
BPUM_0344___y 273 GATGG-CGCCAGATGCCGTCATTAAGGTGATACCAAATGATTCGTGGGGG 321
BSNT_00656___ 274 TATTCCGCATTTTATGTAGGCAAGCAAGAGAATATAACTATTTCCGGAGG 323
|||.|.||.||||||.||||.|||....||.||.|.||.||....||.||
BPUM_0344___y 322 TATGCGGCCTTTTATATAGGAAAGGTTCAGCATGTGACCATCAGGGGCGG 371
BSNT_00656___ 324 ACAAATTATCGGCGAACGGG------ATGAGCATACGTAT----GTC--- 360
.|.||| ||||.||| ||||.||| |||| |||
BPUM_0344___y 372 GCGAAT------CGAAGGGGATCGACATGAACAT--GTATACAAGTCGCT 413
BSNT_00656___ 361 TCGGCGGG---GATAAGGTCAACCCATGAATGGGGCTTTGGCATATGTAT 407
||..|..| ||.| |||||||||.|||||||||||.||||||||
BPUM_0344___y 414 TCCCCCTGAACGAAA-----AACCCATGAGTGGGGCTTTGGGATATGTAT 458
BSNT_00656___ 408 TGAAG--------GATGCTCGAATGTTCTCATTGATGAT-GTG------- 441
||||| |||| |.|| |.||| || |||
BPUM_0344___y 459 TGAAGGGGCATCTGATG-TAGA--------AGTGA--ATCGTGTACAAAT 497
BSNT_00656___ 442 -AAAATTTCCGATTTTACCGGCGATGGGATCATAGTCAG--CCCAAGGGG 488
|||| |||.|||.||.||.||.|||||.||||| ||||.||
BPUM_0344___y 498 CAAAA------ATTGTACGGGAGACGGCATCATTGTCAGTCCCCATGG-- 539
BSNT_00656___ 489 ATTAAAGACCAATCAAGATTATCGAACG---------------TCAGAGC 523
||.|..|.|| ||.|.|.| |||| ||....|
BPUM_0344___y 540 -TTTATTATCA--CAGGTTGA---AACGTACTCTCCTGCTTCATCTATTC 583
BSNT_00656___ 524 AAATTATCATCCGCCGCTGTGAGGTTCGGCGG--TCGAGGAGAAATAACA 571
|.||| ||.| |.||..|.||| .|.| ||.|||.||||.||.|
BPUM_0344___y 584 ATATT----TCTG--GTTGCCACGTT--ACAGATTCAAGGCGAAACAATA 625
BSNT_00656___ 572 TTTCCATTACCGGATGTGACATGGTCACGGTGGAGGAGTGCTTGATTGA- 620
|.||.||.||.||.||||||..|||||..||||||||.||..||.||||
BPUM_0344___y 626 TCTCGATCACAGGCTGTGACGGGGTCATTGTGGAGGACTGTCTGCTTGAG 675
BSNT_00656___ 621 AGATGCCGG----AACGGGGAATGGAACAGCCCCGAAATTCGGAATTGAC 666
||| ||.|| ||| |||.|.| ||||..||| |.||.|||||.
BPUM_0344___y 676 AGA-GCAGGAGTAAAC--GGAGTCG---AGCCAAGAA--TGGGCATTGAT 717
BSNT_00656___ 667 ATTGAAGGATATGGCGAAGGTGACGTTGATTAT-GAGGAACCGATTAATG 715
||||||||.||.||.|||..|| |..|||.||| |||||||||.|.|||.
BPUM_0344___y 718 ATTGAAGGCTACGGGGAAAATG-CAGTGAATATGGAGGAACCGCTGAATA 766
BSNT_00656___ 716 TATCAATTCGCAATAACCACTTTGT------TGGAAACGTTTCAAGTTCT 759
| ||||.||..| |||.||.|||| ||| ||...||||.|||
BPUM_0344___y 767 T-TCAAATCCGA--AACAACATTGTAAGAGGTGG---CGCCGCAAGCTCT 810
BSNT_00656___ 760 GTGACCAATTT-TAAC------GGGTATGGCATTTTAATAGAAGGAAATC 802
|||| |||| ||.|||||..|..|.||.|||||.||||
BPUM_0344___y 811 -------ATTTATAACTTCAATGGCTATGGTGTCATCATCGAAGGCAATC 853
BSNT_00656___ 803 ACTCTGACA-ATA-CA--ATCAGCTACGGATATGGGACGCAAACAGTGAT 848
| .||| ||| || |||..|||.||||.||..|||.|||| .||
BPUM_0344___y 854 A----TACAGATAGCAGTATCTCCTATGGATTTGCCACGGAAAC---CAT 896
BSNT_00656___ 849 CAAGGGAAATATACTGAGGCGCCCTG-AAGACGCGGCGGCTGCGCCAAGA 897
||..|..||.|...|||..||..|.| |.||.|.||||.| .|||.|
BPUM_0344___y 897 CATTGCTAACAATTTGATCCGTGCGGTAGGAGGAGGCGTC----ACAAAA 942
BSNT_00656___ 898 GTCGGGATAACCGGACTCGGTGTATCACAAGG---AAAAGAGACCA--GT 942
|..||.||.||..|..|.|||||.||.|..|| ||.|||.|.|| ||
BPUM_0344___y 943 GCAGGAATTACGAGTTTAGGTGTCTCTCTTGGTCAAACAGAAAACAATGT 992
BSNT_00656___ 943 GATGCAGTGATCGCTGGCAACCTCATTACCGGATTTTCAACTGGAATTGA 992
||| || |.|| ||||||..|.|||...||||||..||..||.|||||
BPUM_0344___y 993 GAT-CA-TTAT---TGGCAATATGATTGAAGGATTTGAAAAAGGGATTGA 1037
BSNT_00656___ 993 TGTCAGGGGAAAGAGCGTTC---TTGTGACGAAC----AACAAAATCAG- 1034
|||.|||||..|.||.|||| || || ||.||.|||||
BPUM_0344___y 1038 TGTGAGGGGCGATAGTGTTCACATT-------ACAGGGAATAAGATCAGT 1080
BSNT_00656___ 1035 CAACTTTGAAAACACAGGGATATTG---GTTTAT--------CAGTCTTC 1073
|.| ||||||.|..| ||.| ||| |||||| |.||.|||
BPUM_0344___y 1081 CTA-TTTGAAGATGC--GGCT-TTGTCCGTTTATATGGCGAACCGTATTC 1126
BSNT_00656___ 1074 CGACGTAAAGGTAGACGGAAACCAAATTCAAAAC--GGACTGTCTGAA-A 1120
||| ||||.|||||.||.||| .||.| |||| ||| |
BPUM_0344___y 1127 -----TAA---TAGAAGGAAATCATATT-GAATCGGGGAC-----GAATA 1162
BSNT_00656___ 1121 CAAGGCGCAGCATCGGTCTTCGCGCAGTGCT------------GTCAGAT 1158
||.|.|..||.| ||||||.||| |||||||
BPUM_0344___y 1163 CAGGACTAAGAA---------GCGCAGCGCTGCGTATCTATCAGTCAGAT 1203
BSNT_00656___ 1159 GACATCG-CTTTTC--TGAATA--ACTGTCTCATTCAAGTCGTTGACGGT 1203
..|.||| |||||| ..|||| |.|..||| .||..||||.||.
BPUM_0344___y 1204 AGCGTCGTCTTTTCAAACAATACGATTTACTC-----GGTGATTGATGGA 1248
BSNT_00656___ 1204 GTGAACGTTTCCGGCGGA---AATATGATCATTAAAGATAATCTCCTGAG 1250
|.||..|| ..|.||| |||||..||||..|..|.||||...|.|.
BPUM_0344___y 1249 GCGATGGT---AAGAGGAACGAATATCCTCATCCAGCACAATCAATTCAA 1295
BSNT_00656___ 1251 AAAATTCAGCCGGGGCATTTGGATTGC-TCAAGGGAACGCGG-------- 1291
|.||||||||.|.||.||.||| .||| ..|||||.|.||.|
BPUM_0344___y 1296 AGAATTCAGCAGAGGGATCTGG-GTGCAGGAAGGGGAAGCTGGAATCAAC 1344
BSNT_00656___ 1292 ----------TGATT---GAAGGG----AATATACTGAATCCTGACGCGT 1324
|.||| |||||| ||.|...||.|||.| |||
BPUM_0344___y 1345 GGCAATCACTTTATTCAAGAAGGGCACCAAGAGCTTGGATCTT----CGT 1390
BSNT_00656___ 1325 TTGA--AGCAGTG---CCGGAA-------------------TCATATTCT 1350
.| | |.||||| |.|||| .||||.||.
BPUM_0344___y 1391 AT-ACGATCAGTGTCACTGGAAATGCAAAGGCTTTCATTTGGCATAATCG 1439
BSNT_00656___ 1351 GTTT-------------------CCGT---CACAAACAATGCCGGCGCCA 1378
.||| |||| ||..||| |.|.|||.||||
BPUM_0344___y 1440 CTTTAAGCACTACCAAAACTACGCCGTATACAGCAAC-ACGACGGGGCCA 1488
BSNT_00656___ 1379 T----CATCAAAAACAATACATTTAAAGAGTTCAAAAATTACCCCATTTA 1424
| .||||||.|||||.|.|||.||| |||.|.| ||||
BPUM_0344___y 1489 TTAGAAATCAAAGACAATTCCTTTGAAG--------AATCATC---TTTA 1527
BSNT_00656___ 1425 TTGCTCCACAAGTGCG-------------AAA------ACCTCAATTATC 1455
| |.|| || ||| |||.||| |||
BPUM_0344___y 1528 T--------ATGT-CGTGATGTATATTAAAAACGGTTCACCACAA--ATC 1566
BSNT_00656___ 1456 GGCAACCACTTAGAGAGATCTCCGCTTTTGGTCACCATCTATATC----- 1500
| |||||..|||||| |.||.||.|||
BPUM_0344___y 1567 G-------------GAGATAACCGCTT-------CTATTTAAATCGTTCG 1596
BSNT_00656___ 1501 -----AGCGCCGGTGTGCATGAGATTTTT---GATAATACCATTTCAGTC 1542
|..|||| .|| |.|||.||| |||.|..|...|||||.|
BPUM_0344___y 1597 TTCGGACAGCCG----ACA-GCGATCTTTATCGATCAAGCGGCTTCAGCC 1641
BSNT_00656___ 1543 AAC-AGAACAGCCGGGAATCCGAT--TGTGATTTAT----------ATCA 1579
| .|.||.|| |||||...|| | |.|||||| |.||
BPUM_0344___y 1642 --CGTGTACTGC--GGAATAACATCAT-TAATTTATCTCCTCAAAAAGCA 1686
BSNT_00656___ 1580 ATGGC--TCTGCAGGCTCTATCGTCTCAGGAAACA------------CCA 1615
||.|| ||.||| |..|||||||| |..|| |||
BPUM_0344___y 1687 ATTGCTGTCCGCA--CCATATCGTCT----ACTCATTCCGTGATCGCCCA 1730
BSNT_00656___ 1616 TCAATAACCTC-TCCGCGGACACT--GCGACAGCTATTCAAACAACCACA 1662
| ||||..||| ..||..|.||.| |||||| ||.||.||| .|
BPUM_0344___y 1731 T-AATATGCTCGAACGTAGCCAATTGGCGACA------CATACGACC-GA 1772
BSNT_00656___ 1663 TCAACCAATTCCAAAATCATCGGCAACCGCATTTTTAAAGGG----ACCA 1708
|| ..|||||.||.| ||.||.|||..| ||||
BPUM_0344___y 1773 TC-----------GGATCATTGGAA-----ATATTGAAATCGATACACCA 1806
BSNT_00656___ 1709 TCAACAAACATAGCAGTGATACAATAGACGGCAATATGATTGTCTGA 1755
|.|
BPUM_0344___y 1807 TAA-------------------------------------------- 1809
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