Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00642 and BPUM_0340

See Amino acid alignment / Visit BSNT_00642 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:26
# Commandline: needle
#    -asequence dna-align/BSNT_00642___yckK.1.24716.seq
#    -bsequence dna-align/BPUM_0340___yckK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00642___yckK-BPUM_0340___yckK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00642___yckK-BPUM_0340___yckK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00642___yckK
# 2: BPUM_0340___yckK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     611/826 (74.0%)
# Similarity:   611/826 (74.0%)
# Gaps:          29/826 ( 3.5%)
# Score: 2182.5
# 
#
#=======================================

BSNT_00642___      1 ATGAAAAAAGCATTATTGGCTTTATTCATG---GTCGTAAGTATTGCAGC     47
                     |||||||||...||.||.||  .||| |||   |.||...||.|||||  
BPUM_0340___y      1 ATGAAAAAAATGTTCTTTGC--CATT-ATGTTAGGCGCTTGTGTTGCA--     45

BSNT_00642___     48 TCTTG----CAGCTTGCGGAGCAGG---AAATGACAATCAGTCAAAAGAT     90
                       |||    |.||.||.|||.|.||   ||..|||||  .|..||.|.|.
BPUM_0340___y     46 --TTGATCACGGCATGTGGATCTGGTGCAAGCGACAA--CGCGAATAAAC     91

BSNT_00642___     91 AAT----GCCAAAG--AT--GGCGATCTTTGGGCTTCAATTAAGAAAAAA    132
                     |||    |.|.|||  ||  ||.||.||||||...||.|||.||.|.|||
BPUM_0340___y     92 AATCTGGGTCTAAGGAATCAGGTGACCTTTGGAAATCCATTCAGGATAAA    141

BSNT_00642___    133 GGTGTGCTCACAGTCGGAACGGAAGGAACATATGAGCCGTTCACTTACCA    182
                     |||||.||.||..|||||||.||.||.||.||||..||.|||||.|.|||
BPUM_0340___y    142 GGTGTTCTGACGATCGGAACAGAGGGTACTTATGCTCCTTTCACATTCCA    191

BSNT_00642___    183 CGACAAAGACACTGATAAACTGACTGGCTATGATGTCGAAGTTATCACAG    232
                     .||||||.|.||.||||||.|.||||||||.|||||.|||||.|||||||
BPUM_0340___y    192 TGACAAAAAGACAGATAAATTAACTGGCTACGATGTAGAAGTCATCACAG    241

BSNT_00642___    233 AAGTCGCAAAACGCCTCGGGCTTAAAGTC-GACTTTAAGGAAACACAATG    281
                     ||||.||||||||.|| .|.||||||..| ||.||.||.|||||||||||
BPUM_0340___y    242 AAGTAGCAAAACGTCT-TGACTTAAAACCTGAATTCAAAGAAACACAATG    290

BSNT_00642___    282 GGACAGCATGTTTGCCGGCCTGAATTCCAAACGGTTTGACGTCATTGCCA    331
                     |||||||||||||||.||.||||||||.|||||.||||||||..|.||.|
BPUM_0340___y    291 GGACAGCATGTTTGCTGGACTGAATTCAAAACGTTTTGACGTGGTAGCGA    340

BSNT_00642___    332 ACCAAGTCGGAAAAACAGATCGTGAAGACAAATATGATTTCTCAGATAAA    381
                     |||||||.||.|||||.|..||||||.|..||||.||.|||||.||||||
BPUM_0340___y    341 ACCAAGTTGGTAAAACTGGACGTGAAAATCAATACGAGTTCTCTGATAAA    390

BSNT_00642___    382 TACACAACATCAAGAGCCGTTGTCGTTACGAAAAAAGACAACAACGATAT    431
                     ||||||||.||...||||.||||.||.||.|||..|||.||||||||.||
BPUM_0340___y    391 TACACAACGTCTCAAGCCATTGTTGTGACAAAATCAGATAACAACGACAT    440

BSNT_00642___    432 TAAGTCAGAAGCAGATGTAAAAGGAAAAACATCAGCTCAATCACTGACAA    481
                     .|||..|..|.|.|||||.|||||.||||.|.||||.|||||..|.||||
BPUM_0340___y    441 CAAGAAACTATCTGATGTCAAAGGCAAAAAAGCAGCACAATCCTTAACAA    490

BSNT_00642___    482 GCAACTACAACAAATTAGCTACAAATGCCGGCGCTAAAGTAGAAGGCGTT    531
                     |.||||||||.|||.||||.|||.||||.|||||||||.|.|||||||||
BPUM_0340___y    491 GTAACTACAATAAACTAGCAACAGATGCTGGCGCTAAAATTGAAGGCGTT    540

BSNT_00642___    532 GAAGGTATGGCGCAGGCCCTTCAAATGATCCAGCAAGGCCGCGTCGATAT    581
                     ||.|||.|.||.||..|..|||||.||||.||||||||.||.|..|||.|
BPUM_0340___y    541 GAGGGTCTTGCACAATCGATTCAATTGATTCAGCAAGGACGTGCTGATTT    590

BSNT_00642___    582 GACATACAACGATAAACTTGCCGTATTGAACTACTTAAAAACATCTGGCA    631
                     |||||.|||.||.||.||.||.||||||||.|||||.||||||...||.|
BPUM_0340___y    591 GACATTCAATGACAAGCTAGCTGTATTGAATTACTTGAAAACAAGCGGGA    640

BSNT_00642___    632 ATAAAAACGTGAAAATCGCGTTTGAAACAGGTGATCCTCAGTCAACATAT    681
                     |.||||||.|.|||.|.||.|||||||||||.||||||||...|||.||.
BPUM_0340___y    641 ACAAAAACCTAAAAGTTGCATTTGAAACAGGAGATCCTCAAGAAACTTAC    690

BSNT_00642___    682 TTCACGTTCCGTAAAGGAAGCGGCGAGGTTGTTGATCAAGTCAACAAAGC    731
                     ||..|.|||.|.|||||.||||||||.||.|||||..||||.||....||
BPUM_0340___y    691 TTTGCATTCAGAAAAGGCAGCGGCGAAGTCGTTGACAAAGTGAATGGCGC    740

BSNT_00642___    732 ATTAAAAGAAATGAAAGAGGACGGGACTCTTTCTAAAATTTCTAAAAAAT    781
                     ||||||||||||||||.|.|||||.||.|||.||||.||||||||.||||
BPUM_0340___y    741 ATTAAAAGAAATGAAAAAAGACGGTACACTTGCTAAGATTTCTAAGAAAT    790

BSNT_00642___    782 GGTTCGGCGAAGATGTTTCTAAATAA    807
                     ||||.||.|||||||||.|.||.|||
BPUM_0340___y    791 GGTTTGGTGAAGATGTTACAAAGTAA    816


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00642 and BPUM_0340

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
