Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00640 and BPUM_0339
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00640___yckJ.1.24716.seq
# -bsequence dna-align/BPUM_0339___yckJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00640___yckJ-BPUM_0339___yckJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00640___yckJ-BPUM_0339___yckJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00640___yckJ
# 2: BPUM_0339___yckJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 711
# Identity: 507/711 (71.3%)
# Similarity: 507/711 (71.3%)
# Gaps: 24/711 ( 3.4%)
# Score: 1717.5
#
#
#=======================================
BSNT_00640___ 1 ATGTTTCTAAATAATCTGCCGGCATTGACGCTTGGCACGGCG--ATCCCG 48
|||||.|.||.|||| ||.||.|| .|.|| ||.||.
BPUM_0339___y 1 ATGTTACAAAGTAAT------------ACCCTAGG--AGTCGTCATTCCT 36
BSNT_00640___ 49 TGGGATCTGGTGCAGCAGTCATTCTGGCCGATACT--TTCAGGGGGAATC 96
||||||||..|.|||||.||.||.|||||.||..| |.|||||| ||.
BPUM_0339___y 37 TGGGATCTTCTTCAGCAATCTTTTTGGCCAATGGTGATGCAGGGG--ATT 84
BSNT_00640___ 97 TACTATACGATTCCCCTTACGATTCTTTCCTTTA-TATTCGGAATGATCC 145
||.|||||.||.||||||.|.||..||.|||||| |||| ||.||..|..
BPUM_0339___y 85 TATTATACAATCCCCCTTGCCATCATTGCCTTTATTATT-GGTATTTTTA 133
BSNT_00640___ 146 TGGCGCTGATTACGGCGCTTGCCAGAATGTCGAAAGTGAGACCTTTGAGA 195
|.|||||..|.||.||.|||||.||||||||.|||.|.|.|.|..|.|||
BPUM_0339___y 134 TTGCGCTTGTGACAGCTCTTGCTAGAATGTCTAAAATCAAAGCCCTCAGA 183
BSNT_00640___ 196 TGGGTGTTCAGCGTATACGTATCCGCAATACGCGGCACTCCTCTTCTCGT 245
|||.|.||...|.|.||.||.||.||..|.||.||.||.||.|||.|.||
BPUM_0339___y 184 TGGATTTTTTCCATCTATGTGTCGGCCGTTCGTGGAACGCCGCTTTTTGT 233
BSNT_00640___ 246 TCAATTGTTCATCATTTTCTATCTGTTCCCGGCCTTTAACGTCACATTAG 295
.||||||||.||.|||||||||.|.||.|||.|.|||||..|||||.|||
BPUM_0339___y 234 GCAATTGTTTATTATTTTCTATTTCTTTCCGACATTTAATATCACACTAG 283
BSNT_00640___ 296 ATCCATTTCCAAGCGCAGTTATCGCCTTTTCATTAAACGTCGGCGCCTAT 345
||||||.||||||.||..||||.||.||||||||||||||.||.||.|||
BPUM_0339___y 284 ATCCATATCCAAGTGCCATTATTGCTTTTTCATTAAACGTAGGTGCGTAT 333
BSNT_00640___ 346 GCATCTGAAATCATTCGGGCATCTATTTTATCCGTGCCGAAAGGGCAATG 395
||.||.||.||.||.||.|||||..|..|.||.||.||.|||||.|||||
BPUM_0339___y 334 GCGTCAGAGATTATCCGTGCATCCGTCCTGTCTGTTCCTAAAGGACAATG 383
BSNT_00640___ 396 GGAAGCCGGCTACACAATTGGCATGACACATCAAAAAACGCTGTTCCGCG 445
||||||.||.||..|||||||.|||||.||||..||.|||||..||||||
BPUM_0339___y 384 GGAAGCTGGTTATTCAATTGGGATGACGCATCGTAAGACGCTCGTCCGCG 433
BSNT_00640___ 446 TCATTTTGCCGCAGGCGTTTCGTGTGTCGATCCCGCCATTATCCAATACC 495
|.|||||.||||||||..|.|||||.|||||.||||||.||||.|||.|.
BPUM_0339___y 434 TGATTTTACCGCAGGCTGTGCGTGTATCGATTCCGCCACTATCTAATTCA 483
BSNT_00640___ 496 TTTATCAGCCTGATTAAAGATACATCCCTCGCCTCTCAAATTCTGGTCGC 545
||.||.||..||.|.||.|||||||||||.|||||.|||||.||.||.||
BPUM_0339___y 484 TTCATTAGTTTGGTGAAGGATACATCCCTTGCCTCCCAAATCCTCGTGGC 533
BSNT_00640___ 546 TGAGCTGTTCAGAAAAGCCCAGGAAATCGGCGCGCGGAATCTT-GATCAA 594
.|||.|||||.|.|||.|.||||||||.|..|||..||| ||| |||||.
BPUM_0339___y 534 AGAGATGTTCCGTAAATCTCAGGAAATTGCTGCGGCGAA-CTTGGATCAG 582
BSNT_00640___ 595 ATTTTAGTGATCTATATTGAAGCAGCCTTTATTTATTGGATTATCTGCTT 644
||.||..|.||.|||||.|||||||||.|.||.||||||.|..|||||||
BPUM_0339___y 583 ATCTTGTTCATTTATATGGAAGCAGCCCTGATCTATTGGGTATTCTGCTT 632
BSNT_00640___ 645 CCTGCTTTCACTCGTCCAGCATGTCATCGAACGGCGTCTTGACCGCTACG 694
|.|..|.||||||||.||||||...||.|||...||.|||||.||.||.|
BPUM_0339___y 633 CATTTTATCACTCGTTCAGCATCAAATTGAAAAACGACTTGATCGATATG 682
BSNT_00640___ 695 TGGCCAAATAA 705
|.||.|..|||
BPUM_0339___y 683 TCGCAAGGTAA 693
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