Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00610 and BPUM_0312
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00610___nucA.1.24716.seq
# -bsequence dna-align/BPUM_0312___nucA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00610___nucA-BPUM_0312___nucA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00610___nucA-BPUM_0312___nucA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00610___nucA
# 2: BPUM_0312___nucA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 482
# Identity: 302/482 (62.7%)
# Similarity: 302/482 (62.7%)
# Gaps: 85/482 (17.6%)
# Score: 842.5
#
#
#=======================================
BSNT_00610___ 1 GTGAACATCACGACGGACATCATAAAAACGATACTTCTCG-------TCA 43
.|||| ||.||.|||||.| ||.||| |.| |.|
BPUM_0312___n 1 ATGAA-----------ACTTCTTAAAATC-ATTCTT-TTGCTTTTATTGA 37
BSNT_00610___ 44 TCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAAAGGAGACTTTTTC 93
||||| |..|.||.||| ||.||| ||.|.|
BPUM_0312___n 38 TCGTC------GTTGGTGTAGC------------AACAGG---CTATAT- 65
BSNT_00610___ 94 TCAGCT-GATCAAA--AAACGTCTCAA---ACGAAAGAA-------TATG 130
|||||| ||.|||| ||| ||| ||| |.||| ||||
BPUM_0312___n 66 TCAGCTGGAGCAAAGTAAA-----CAAGAGACG-ACGAATTCATCTTATG 109
BSNT_00610___ 131 ATGAAACAATCGCCTTCCCATCTGACCGGTATCCCGAAACTGCCAAGCAT 180
|..|.|||||...|||||||||.||.||.||.|||||.||.||.|||||.
BPUM_0312___n 110 ACAAGACAATTCACTTCCCATCAGATCGTTACCCCGAGACAGCGAAGCAC 159
BSNT_00610___ 181 ATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAG 230
||..||||.||.||..|.||.||.||.|||...||.||.||.||||||.|
BPUM_0312___n 160 ATAGAGGAGGCAATTGACGAAGGACATTCATCTGTATGTACGATTGACCG 209
BSNT_00610___ 231 AG-ACGGAGCTGAAGAACGCCGCGAGCAATCA-TTAAAGGACGTACCTTC 278
.| ||..||| ||.||||...|.||.|||||| ||.||| |.||| |
BPUM_0312___n 210 TGAACATAGC-GATGAACAAAGAGAACAATCACTTCAAG---GCACC--C 253
BSNT_00610___ 279 CAA-AAAG---GGGTATGACAGAGATGAATGGCCAATGGCCATGTGCAAA 324
||| |||| ||||||||..|||||||||||||.|||||.||||||||.
BPUM_0312___n 254 CAACAAAGCGCGGGTATGATCGAGATGAATGGCCGATGGCGATGTGCAAG 303
BSNT_00610___ 325 GAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCG 374
|||||.||....|||||.||.||..|.||.|||..|||..|.||.||..|
BPUM_0312___n 304 GAAGGAGGAACAGGAGCCTCAGTCAAGTATATTAGTCCTTCAGATAATAG 353
BSNT_00610___ 375 CGGAGCAGGCTCTTGGGTCGGGCATCAGCTTA-CCGATTACCCAGACGGC 423
.|||||||||||.||||||||.||||| .||| |.|||.|.||.||||||
BPUM_0312___n 354 AGGAGCAGGCTCATGGGTCGGTCATCA-ATTATCTGATGATCCCGACGGC 402
BSNT_00610___ 424 ACAA----AGGTTTTATTCA-CAATTCAGTAA 450
|||| |...|||| ||| |.|||.|
BPUM_0312___n 403 ACAAGAATACAATTTA-TCATCGATTAA---- 429
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