Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00612 and BPUM_0311
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00612.1.24716.seq
# -bsequence dna-align/BPUM_0311___tlpC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00612-BPUM_0311___tlpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00612-BPUM_0311___tlpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00612
# 2: BPUM_0311___tlpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1772
# Identity: 605/1772 (34.1%)
# Similarity: 605/1772 (34.1%)
# Gaps: 955/1772 (53.9%)
# Score: 1607.5
#
#
#=======================================
BSNT_00612 1 ATGTTGATAAAACGATTTAAGATGAAGCTAGGAACTAAAATTCTTTGC-- 48
|||..||.||||.|| ||..|||.|||.||..|.||||| |||||
BPUM_0311___t 1 ATGAAGAAAAAAGGA---AAACTGAGGCTTGGTGCCAAAAT--TTTGCTG 45
BSNT_00612 49 CTCGTTTT-CGTGGTGATTCTTTTGTTTTCGGCATCAGTTGGCACTGTGA 97
.||.|||| .|| ||.||..|..|.|||||.|||...|||||...||||.
BPUM_0311___t 46 ATCTTTTTAAGT-GTCATCATCATCTTTTCCGCAATTGTTGGTTATGTGG 94
BSNT_00612 98 TGCTTAAGGAAATTACAGAAAACATGAAACAAATGGCAACTGAAAAAGCG 147
||..|...||.||.|||||||||||.||.||.|||||.|||||||||||.
BPUM_0311___t 95 TGAATCGTGAGATGACAGAAAACATCAAGCACATGGCCACTGAAAAAGCA 144
BSNT_00612 148 AAAGGTGATCTCGCTTTAAGC-AGCACT-----TATATTGATGATGTCA- 190
|||||.||| ||.|||| || .|| ||..|.||||| |
BPUM_0311___t 145 AAAGGGGAT-----TTAAAGCTAG-GCTATGCCTACCTAGATGA----AA 184
BSNT_00612 191 ---TATCAGGCGACTGGCAGGTGAAAAACAATAAGCTCTATAAAGGGCAA 237
||.|||||...||||||.|.|||.|....|||||.||.||||||.|.
BPUM_0311___t 185 AAGTAGCAGGCTCGTGGCAGATAAAAGATGGAAAGCTTTACAAAGGGAAT 234
BSNT_00612 238 ACACAAATCAATGGAAATGA-AGAGCTTGTTGATCTGC---TTGGTGAAA 283
||.||||||||||...|||| |.| |||.||..| ||.| .|||
BPUM_0311___t 235 ACCCAAATCAATGATCATGATACA-----TTGGTCGACCATTTAG-CAAA 278
BSNT_00612 284 AAACA--GGTGATACCATTACCATTTTCCAAGGCGATACTCGTGTTGCAA 331
|.||| |.||||||.||.||.|||||||||||..||||.|||||.||||
BPUM_0311___t 279 ATACACCGATGATACGATCACAATTTTCCAAGGAAATACCCGTGTCGCAA 328
BSNT_00612 332 CCAATGTCATGAAAAATGGCGAAAGAGCTGTCGGCACTCAGGCTTCTTCT 381
|.|||||||||..|||.|||.||.||||||||||.||.||.|.|||..|.
BPUM_0311___t 329 CGAATGTCATGTTAAACGGCAAACGAGCTGTCGGTACACAAGTTTCACCA 378
BSNT_00612 382 GAAGTTATTGCCGCTGTTTTAAAGAAAGG---AAAGTGTTTTTACGGACA 428
|||||.|..|||.||||.|||.|..|||| ||| .|.|||||| ||
BPUM_0311___t 379 GAAGTGAAGGCCACTGTATTAGATCAAGGTGAAAA---CTATTACGG-CA 424
BSNT_00612 429 -AGCAGATGTAGCAGGTTCTTCT-------TATCAGACTGCATACATGCC 470
||||.||||.||.|| |||||.||.||.||.|||||
BPUM_0311___t 425 CAGCAAATGTTGCTGG-------GAAAGACTATCAAACGGCTTATATGCC 467
BSNT_00612 471 GTTAAAAGATCA--------AAACGGGAGCATCATCGGCATGCTGTATAC 512
..|.|||.||.| ||||| |||||.||..|.|||||
BPUM_0311___t 468 AATCAAAAATGATGCAGGTGAAACG--------ATCGGTATTTTTTATAC 509
BSNT_00612 513 CGGAGCTAATCAAAGTAT--TTTAGCATCA----CTTACACAATCACTTT 556
.||.||.||.|||.|||| ||| || || ||| ||.|||.|.|
BPUM_0311___t 510 GGGCGCCAACCAAGGTATGATTT--CA-CAAATGCTT---CAGTCATTCT 553
BSNT_00612 557 TCACTCAATTCGCTATCGTTC--TTGTT-ATCGTCATT-ATGCTATCAGT 602
.||.||||||....||.|||| ||||| |.|.|.||| .|||| ||
BPUM_0311___t 554 ACATTCAATTTTTCATTGTTCTGTTGTTAAGCTTAATTGTTGCT----GT 599
BSNT_00612 603 CATCCTTGTCTTGGTTTTCACCAGAA---AAATCAA--------CAAGCG 641
.|||.||.|.|...||||.|| ||| .|.|||| ||||||
BPUM_0311___t 600 GATCATTATTTCTATTTTTAC--GAAGCGGATTCAAACCCGTCTCAAGCG 647
BSNT_00612 642 CCTGAACGCTTTAAAAAGC-GCCTTTGAAAGTGCCGGAAACGGAGATATG 690
|.|| |||| | |||.||.|.|||||.|||.|.||..||.|.
BPUM_0311___t 648 CATG---GCTT-------CTGCCATTAAGAGTGCAGGAGAAGGCAATTTA 687
BSNT_00612 691 ACAATAGAGGTGTCAGACAAAACCGGTGACGAGCTATCAGAACTAAGCGT 740
||.||..|.|||.||||.|.|||.||.||.||.||.||.||..| |.
BPUM_0311___t 688 ACCATCAATGTGACAGATACAACAGGCGATGAACTGTCTGATTT----GG 733
BSNT_00612 741 CT----ATTATAATAAGAT--GAGAATGAAGCTGAACGATACCATACAAA 784
|| |||..|||||||| |.||| ||..|.||..|.|||||.|..|
BPUM_0311___t 734 CTGATCATTTCAATAAGATGCGGGAA--AAATTAAATCACACCATTCTTA 781
BSNT_00612 785 CCGTACAACAATCAGCCCTTC--AGCTTGCGTCAGCC---TCTCAGCAGC 829
..|| .||.|.|.|.|| |..|.|.|.||.|| |||.|.||||
BPUM_0311___t 782 ATGT-----GATGAACACGTCTGAATTAGTGGCAACCTCATCTGAACAGC 826
BSNT_00612 830 TCTCAGCCGGAGCAGAGGAAACAAATCAAGCTTCAGAAAAAATCAC---- 875
|.|||||..|.|||||.|||||||.|..|||.||||||||||||||
BPUM_0311___t 827 TGTCAGCTAGTGCAGAAGAAACAAGTGCAGCATCAGAAAAAATCACCCAT 876
BSNT_00612 876 --------AGAA---GCT------------GTACAGT------------- 889
|||| ||| |.|||||
BPUM_0311___t 877 AGTATTCAAGAAGTCGCTCATTCATCAGAAGAACAGTCTGCTCAAATGAC 926
BSNT_00612 890 ----AG-------------------------------------------- 891
||
BPUM_0311___t 927 AACAAGTGAGCACACAATGATTCAAGTATCTAACGAATTGGCAAACATCA 976
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 977 CGGACAATGCAGGGCAAATGGCTTCAAGAAGTCAATATGCACAAGAAATG 1026
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1027 GCTTTAAAAGGTGTACAGAATATTGGGGAAGTAAACTCACAAATGACATC 1076
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1077 TATTGCAAAATCAATAGAGGAAAATGGGACAGCCATTCAAGCATTAGAAA 1126
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1127 CACGTTCGGCTGAAATTGATCACATTTCCCATGTTATTACAGACATCGCT 1176
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1177 AACCAGACCAACCTACTTGCTCTTAACGCAGCAATTGAAGCAGCACGAGC 1226
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1227 AGGCGAGCATGGGAAAGGATTTGCGGTTGTTGCAGACGAAGTGAGAAAGC 1276
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1277 TCGCTGAAGAGTCTCAAGCATCATCAAATATGATTTCCCATCTCATTTCT 1326
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1327 GAAATACAAAAAGAGATGACATATTCAACAAGTGCGATCAAGCGGGTAAG 1376
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1377 AGAAGAAGCAGCTCAAGGGACTGTACTTATTTCTCATACAGAAGAATCAT 1426
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1427 TTATTGATATTCAGCAGTCAATGAGAGAAATGGCAGATGGTATTAAGCAT 1476
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1477 TTATCTAGTGCATCTCAAAAAATCGCAGCTTATACAAACGATGCGAAACA 1526
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1527 ATCCTTTGCCACTATTACAGAAGGGGTTAAATTAACAAGTGAACATTCAC 1576
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1577 AGCAAGTAGCCGGTTTAACAGAAGAACAATTTGCTGCAATGGAAGAAGTA 1626
BSNT_00612 891 -------------------------------------------------- 891
BPUM_0311___t 1627 ACTGCTTCATCAGAAGCTCTTGCCCATTTAGCAGGAGATTTAAAAACAAT 1676
BSNT_00612 891 ---------------------- 891
BPUM_0311___t 1677 GGTTTCACAATTTCACATCTAG 1698
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