Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00602 and BPUM_0306
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00602___yckD.1.24716.seq
# -bsequence dna-align/BPUM_0306___yckD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00602___yckD-BPUM_0306___yckD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00602___yckD-BPUM_0306___yckD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00602___yckD
# 2: BPUM_0306___yckD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity: 205/399 (51.4%)
# Similarity: 205/399 (51.4%)
# Gaps: 135/399 (33.8%)
# Score: 512.5
#
#
#=======================================
BSNT_00602___ 1 ATGAAACGAATAA----CCATTAACATCATAACAATGTTCATTGCAACG- 45
||||||.|||||| | .|||||||...|.||
BPUM_0306___y 1 ATGAAAAGAATAAGTGGC----------------TTGTTCATATTATCGG 34
BSNT_00602___ 46 ----ACTGTCATTTCTCTGACCGGT------------ACAGCTGAGGCCG 79
.|||| ||.||||| ||||||.|.|
BPUM_0306___y 35 TGATGCTGT--------TGTCCGGTTTTTATATGGAAACAGCTCATG--- 73
BSNT_00602___ 80 CTGAAAAACA--------GCAGCAGCCTCC-----CGCA--AATGTTACA 114
||.||||| |.|..|||.||| |||| || ||.|.|
BPUM_0306___y 74 --GAGAAACACCTCAAATGGAAAAGCGTCCAGTAACGCATCAA-GTAAAA 120
BSNT_00602___ 115 CT---GACAGATCAGC-AAAAGAAAGAGGTTGAACAACTGGAAGCAG-AG 159
|| ||||||.||.| ||||.||| |||||...||.| ||||| |.
BPUM_0306___y 121 CTAACGACAGAACAACAAAAACAAA----TTGAAACGCTTG-AGCAGCAA 165
BSNT_00602___ 160 ATTCTTAAAAAGCGCAAAGACGTAATCTCA-AAGTATGTACAATACGGTG 208
||||||...||.||.|||||.||.|| |.| |||||.||.|||||.||||
BPUM_0306___y 166 ATTCTTTCTAAACGAAAAGAAGTGAT-TGAGAAGTACGTCCAATATGGTG 214
BSNT_00602___ 209 TCCTGCCTAAAGAAAGAGGAGAACACATTAAAAATCACTTGG-------- 250
|..|..|.||.|||..|||...|||.||||..||.|...|||
BPUM_0306___y 215 TGTTAACAAAGGAACAAGGTACACATATTACGAAACGAATGGATGAGCAT 264
BSNT_00602___ 251 -ACAAACACTTTGAAATGATGAAACAAAACGGCTTTGTT----------- 288
||||.|| |||||| |||| |||||.||||||
BPUM_0306___y 265 TACAATCA-TTTGAA------AAAC--AACGGATTTGTTCCATTGCTGAA 305
BSNT_00602___ 289 ----CCAAAGCACCATCCTCATCCGCATAAATTTGAAAAAAGACATTAA 333
|||.|||||||||..| |||||
BPUM_0306___y 306 AAAACCACAGCACCATCGAC-----CATAA------------------- 330
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