Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00599 and BPUM_0305
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00599___yckB.1.24716.seq
# -bsequence dna-align/BPUM_0305___yckB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00599___yckB-BPUM_0305___yckB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00599___yckB-BPUM_0305___yckB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00599___yckB
# 2: BPUM_0305___yckB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity: 617/914 (67.5%)
# Similarity: 617/914 (67.5%)
# Gaps: 91/914 (10.0%)
# Score: 2008.5
#
#
#=======================================
BSNT_00599___ 1 GTGA--------AATCATTCAAGCAATCCAAAGCCGTTATATTCAGTTTC 42
.||| .|||||..|| |||| .|||..|.|
BPUM_0305___y 1 ATGAGTCGTTTTTATCATAGAA--AATC-----------GATTTGGGT-- 35
BSNT_00599___ 43 ACAATG------------GCTTTCTTTCTTATATTGGCAGCCTGTTCCGG 80
|||| ||||||.|.|||.|.|||.|.||.|| |.|.
BPUM_0305___y 36 --AATGCTTGTTGTGTCTGCTTTCATACTTGTCTTGTCTGCTTG--CAGT 81
BSNT_00599___ 81 CAAAAATGAAGC--------------CGATTCCAAGGATACAGGCTGGGA 116
| |||.|.|| .|||||.||| |||||
BPUM_0305___y 82 C---AATCAGGCTCTTCTCAGTCTGGAGATTCAAAG---------TGGGA 119
BSNT_00599___ 117 GCA-AATCAAGGACAAAGGGAAAATCGTAGTCGCTACATCAGGTACGCTC 165
..| |.|||| .|.|||||||||||.||.||.|||||.|||||.||.||.
BPUM_0305___y 120 TAAGATTCAA-AAGAAAGGGAAAATTGTTGTTGCTACTTCAGGCACCCTT 168
BSNT_00599___ 166 TACCCCACTTCTTATCACGATACTGACTCA-GGCTCCGATAAGCTGACGG 214
||.||.||.||.|||||||||||.| ||.| |||...|||.|..||||.|
BPUM_0305___y 169 TATCCAACGTCATATCACGATACCG-CTAATGGCAAGGATCAATTGACTG 217
BSNT_00599___ 215 GCTACGAGGTTGAAGTTGTTCGTGAAGCGGCAAAACGCCTGGGACTGAAG 264
|.||.||.||.|||||.||....|||||....||||||||.|...|.||.
BPUM_0305___y 218 GTTATGAAGTGGAAGTAGTCAAAGAAGCATTTAAACGCCTTGATGTAAAA 267
BSNT_00599___ 265 GTTGAGTTCAAGGAGATGGGCATTGACGGGATGCTGACAGCGGTGAACAG 314
||.||.||.||.||.||||||..|||.||.|||||||..||..|.||...
BPUM_0305___y 268 GTAGAATTTAAAGAAATGGGCTATGATGGCATGCTGAGCGCCATTAATTC 317
BSNT_00599___ 315 CGGACAGGTTGACGCAGCCGCGAATGACATCGATGTGACGAAGGACCGCG 364
.||.||.||.||.||.||.||.|||||||||||..|.||..|.||| .|
BPUM_0305___y 318 TGGTCAAGTGGATGCCGCTGCAAATGACATCGACATCACAGATGAC--AG 365
BSNT_00599___ 365 AGAAG--AAGTTCGCATTTTCTACTCCATATAAATATTCATACGGTACGG 412
|.||| ||||||||.|||||.|||||.||||||||||||||.||.||||
BPUM_0305___y 366 AAAAGATAAGTTCGCCTTTTCGACTCCTTATAAATATTCATATGGCACGG 415
BSNT_00599___ 413 CAATTGTCCGAAAAGACGATTTATCAGGGATTAAAACGCTTAAGGATTTA 462
|.||.||..|||||||||||||.||.||.|||||||||.|.||.||||||
BPUM_0305___y 416 CGATCGTAAGAAAAGACGATTTGTCTGGCATTAAAACGTTAAAAGATTTA 465
BSNT_00599___ 463 AAAGGGAAGAAAGCGGCTGGCGCGGCTACAACCGTCTACATGGAGGTCGC 512
|||||.||||||||.|||||.||.||.|||||..|.||||||||.|||||
BPUM_0305___y 466 AAAGGAAAGAAAGCAGCTGGTGCTGCCACAACGATTTACATGGATGTCGC 515
BSNT_00599___ 513 GAGAAAATACGGCGCCAAAGAAGTGATTTATGATAATGCGACGAATGAGC 562
..|.||.|||||.||.||.|||||.||||||||.||||||||.||.||||
BPUM_0305___y 516 TCGCAAGTACGGTGCGAAGGAAGTCATTTATGACAATGCGACAAACGAGC 565
BSNT_00599___ 563 AATATTTAAAAGATGTTGCCAACGGACGCACTGACGTCATTTTAAACGAC 612
||||.|||||.||||||||.|||||.||.||.||.||||||.||||.||.
BPUM_0305___y 566 AATACTTAAAGGATGTTGCTAACGGTCGTACAGATGTCATTCTAAATGAT 615
BSNT_00599___ 613 TATTACCTGCAGACACTTGCGCTCGCGGCATTCCCGGATCTCAACATTAC 662
||||||.||||||||||.|||||.||.|||||||||.|..|.||.|||||
BPUM_0305___y 616 TATTACTTGCAGACACTAGCGCTAGCTGCATTCCCGAAATTAAATATTAC 665
BSNT_00599___ 663 AATTCATCCTGACATCAAGTACATGCCGAACAAACAGGCCCTTGTCATGA 712
.|||||.||||||.|.||.||||||||.|||.||||.|...||||.||||
BPUM_0305___y 666 GATTCACCCTGACTTAAAATACATGCCAAACGAACAAGGTTTTGTGATGA 715
BSNT_00599___ 713 AAAAA---AGCAATGAGGCACTTCAGAAAAAGA--TGAACGAAGCATTGA 757
|.||| |.||..||| |||| ||||||| |.||.|..|..||.|
BPUM_0305___y 716 AGAAAGACAACACAGAG---CTTC--AAAAAGAATTAAATGGTGTCTTAA 760
BSNT_00599___ 758 AAGAGATGAGCAAGGATGGCTCTTTGACTAA-ACTGTCGAAACAATTCTT 806
|.||.||||..||.||.||..|..|||..|| |.|..||||| |||||||
BPUM_0305___y 761 AGGACATGAAAAAAGACGGAACCATGAAAAAGATTTCCGAAA-AATTCTT 809
BSNT_00599___ 807 CAATAAAGCAGATGTATCAAAAAAAATTGATGCCGACGTTCAGGACGTTG 856
.|||.|.|||||.||.|||||.|||||.|||||.||.||..|.||.||.|
BPUM_0305___y 810 TAATCATGCAGACGTCTCAAAGAAAATAGATGCTGATGTCGAAGATGTCG 859
BSNT_00599___ 857 --ATTTGTAA---- 864
||||..||
BPUM_0305___y 860 ACATTTCGAAATAA 873
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