Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00917 and BPUM_0303
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00917___ydfA.1.24716.seq
# -bsequence dna-align/BPUM_0303___arsB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00917___ydfA-BPUM_0303___arsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-BPUM_0303___arsB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: BPUM_0303___arsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1377
# Identity: 901/1377 (65.4%)
# Similarity: 901/1377 (65.4%)
# Gaps: 147/1377 (10.7%)
# Score: 2631.0
#
#
#=======================================
BSNT_00917___ 1 TTGACATCAATGATTTTGGCAGTATTCATCTTTTTAT--TAACTCTAGTA 48
|||..|.||.|.|..|||||..|.||.| ||||.|| |.||.||.||.
BPUM_0303___a 1 TTGGGAGCAGTCACCTTGGCCATTTTGA--TTTTCATCCTGACCCTCGTC 48
BSNT_00917___ 49 TTGGTCATATGGCAGCCGAAAAATTTATCTATAGGGTGGTCAGCCTGTGG 98
.|.|||||.||||||||...|..||||.|.||.||.||||||||.|||||
BPUM_0303___a 49 CTCGTCATTTGGCAGCCCGGACGTTTAACCATTGGATGGTCAGCATGTGG 98
BSNT_00917___ 99 AGGCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAATTTTCAT------G 142
||||||..||.|.|| |.|.||...||.|||| .||||| |
BPUM_0303___a 99 AGGCGCCATTCTTGC---ACTTGCCTTTGGTGTC---GTTCATCTGGGCG 142
BSNT_00917___ 143 ATGTGT--TAACTGTGACAGGGATTGTTTGGAATGCGACCTTGGCTTTTG 190
|||||| .|| |||||....||.||.|||||.||.||.||.||.|||.
BPUM_0303___a 143 ATGTGTGGGAA--GTGACGCAAATAGTATGGAACGCAACATTTGCGTTTA 190
BSNT_00917___ 191 TGGCCATCATACTGATATCGTTAATTCTTGATAATATCGGTTTCTTTGAA 240
|.|.|||.||..||||.|||||||||.|.|||.|.|||||.||.||||||
BPUM_0303___a 191 TTGGCATTATTATGATTTCGTTAATTTTAGATGAAATCGGCTTTTTTGAA 240
BSNT_00917___ 241 TGGGCAGCGCTTCATATGGCTAAGGCTGCAAAAGGAAACGGTGTGCGGAT 290
|||||.||.||.||||||||.||.||.||||||||.||||||||.||.||
BPUM_0303___a 241 TGGGCTGCACTGCATATGGCAAAAGCCGCAAAAGGGAACGGTGTCCGCAT 290
BSNT_00917___ 291 GTTCGTTTATGTATCTCTATTAGGAGCTATTGTCGCCGCGTTATTTGCAA 340
|||..|||||.||.|..|..|.||.|||.|.||.||.||.||.|||||.|
BPUM_0303___a 291 GTTTATTTATTTAACATTGCTTGGCGCTGTCGTGGCTGCTTTTTTTGCGA 340
BSNT_00917___ 341 ATGACGGTGCAGCTCTTATATTGACACCAATCGTATTAGCGATGGTCAGA 390
||||.||.|||||.||.||.|||||.||.|||||.||..|..|.||.|||
BPUM_0303___a 341 ATGATGGAGCAGCACTGATTTTGACCCCGATCGTCTTGTCTGTAGTGAGA 390
BSNT_00917___ 391 GCATTACATTTTAATGA----AAAATTAGTTTTTCCTTTTATCATTGCCA 436
||.|||.|..|..|||| | |..|..|.||||||.|.||.||.|
BPUM_0303___a 391 GCGTTAAACCTAGATGAGCGGA----TGATCCTGCCTTTTGTGATGGCGA 436
BSNT_00917___ 437 GCGGATTTATTGCGGATACCACTTCGCTTCCTTTAGTAGTGAGCAATTTG 486
||||.||||||||.|||||.||.||..|.||.||.||..|.||.||.|||
BPUM_0303___a 437 GCGGCTTTATTGCAGATACAACCTCTTTGCCATTTGTCATTAGTAACTTG 486
BSNT_00917___ 487 GTCAACATTGTTTCAGCGGACTATTTTCATATTACGTTTATTGATTATGC 536
|||||.||.||.|||||.|||||||||||||||..||||.|.||.|||.|
BPUM_0303___a 487 GTCAATATCGTATCAGCCGACTATTTTCATATTGGGTTTCTAGAATATAC 536
BSNT_00917___ 537 ATCCAGAATGGTTGTCCCGTA-CTTGTTTTCGCTGCTG--GCGAGCATCA 583
|.|.|..|||.|.||.||..| |||| |.||||| || ||||||||..
BPUM_0303___a 537 AGCAAACATGTTCGTACCAAACCTTG-TGTCGCT--TGGAGCGAGCATGC 583
BSNT_00917___ 584 TTGTACTTTACCTTTTCTTTAGAAAAAGC--ATACCAAAACGCTATGATC 631
|.||.||||| |.|..||||...||||| ||.||||||...||.||||
BPUM_0303___a 584 TAGTGCTTTA--TGTGTTTTACCGAAAGCTTATTCCAAAAACATACGATC 631
BSNT_00917___ 632 TGACTGAGGTTAAAAAACCTGTTGAAGCAATTAAAGATC----AAA---A 674
||.|..|.|..||..||||.|.|..||| |||| |.| .
BPUM_0303___a 632 TGTCACAAGCGAAGGAACCGGCTTCAGC-------GATCCGGGACATCCG 674
BSNT_00917___ 675 CATGTTCAGACTGTCATGGTATAT-CTTAGGGCTG-CTGTTAATTGGATA 722
|||||||.|..||||.||||||.| ||| ||||| |||.|..|.||.||
BPUM_0303___a 675 CATGTTCCGCTTGTCTTGGTATGTGCTT--GGCTGTCTGCTTGTCGGTTA 722
BSNT_00917___ 723 TTTTGCAAGTGAATTTTTTTCTATCCCTGT----ATCAGTGGTAGCGGGC 768
|||||.|.|.|||.||.||...||.||.|| |||| |.|.||||
BPUM_0303___a 723 TTTTGGAGGGGAACTTATTGGAATTCCGGTCTCCATCA----TTGTGGGC 768
BSNT_00917___ 769 AGCATTGCGATCATTTTCTTAATCGCTGCGCAA-AAG-AGTCCG-----G 811
.|.|||||..|..||||||| .|.|||| |||| ||| |||||| |
BPUM_0303___a 769 GGTATTGCCCTTGTTTTCTT-GTGGCTG-GCAAGAAGAAGTCCGCAAGTG 816
BSNT_00917___ 812 CCGTCCATACAAAGAAAGTG--GTGAAAGAGGCGCCATGGGCTATCGTAT 859
.|| |||| ||.||| .|.|||||.||.||.|||.|.||.||.|
BPUM_0303___a 817 GCG-----ACAA--AACGTGTCATAAAAGAAGCACCGTGGTCGATTGTCT 859
BSNT_00917___ 860 TCTTTTCAATTGGCATGTACGTTGTTGTGTATGGTGTCCGA--AATGCCG 907
|.||.||||||||||||||.||.||.||.|||| |.|.|| ||||.||
BPUM_0303___a 860 TTTTCTCAATTGGCATGTATGTCGTCGTATATG--GACTGAAGAATGTCG 907
BSNT_00917___ 908 GATTAACGGATGTCCTTTCAG-ATGTGAT---TCAAGCCGCAGCTGATCA 953
|..|.||.||..|..|..|.| ||| ||| .||||..|||.| .||
BPUM_0303___a 908 GTCTCACAGAAATATTGGCGGCATG-GATCGAACAAGGAGCATC---GCA 953
BSNT_00917___ 954 AGGATTGTTTGCTGGGACAATTGGAATGGGCTTTATTGCGGCGATTCTTT 1003
.||.|||.||||.||.||.||....||||||.|..||||.||..|.||||
BPUM_0303___a 954 TGGCTTGCTTGCGGGAACGATGTTTATGGGCGTGCTTGCCGCAGTGCTTT 1003
BSNT_00917___ 1004 CTTCCATTATGAATAACTTGCCGACTGTTATGATTGACGC-ATTGGCTAT 1052
|.||..|.|||||.||..|.||.|||||..|.|||||.|| ||| ||.||
BPUM_0303___a 1004 CCTCTGTCATGAACAATCTACCTACTGTGTTAATTGATGCGATT-GCAAT 1052
BSNT_00917___ 1053 TGCCGG---TACAGACACA-CATGGGATGATGAGAGAAGCGCTT-ATTTA 1097
||| |||||||||| || ||..|.||||||||.| |.|| |||||
BPUM_0303___a 1053 ---CGGACATACAGACACAGCA-GGCGTCATGAGAGACG-GATTAATTTA 1097
BSNT_00917___ 1098 TGCAAATGTGATCGGTTCAGATTTAGGGCCTAAAATAACACCGATTGGTT 1147
|||.|||||.|||||.|||.|..|.||.||.|||||.||.||.||.||.|
BPUM_0303___a 1098 TGCCAATGTCATCGGCTCAAACCTTGGTCCGAAAATGACCCCAATCGGCT 1147
BSNT_00917___ 1148 CCTTGGCGACATTATTATGGCTTCATGTTCTTTCGCACAAAGGTATGAAG 1197
|.|||||||||||..|.|||||||||||||||..|.|.|||||..|..|.
BPUM_0303___a 1148 CATTGGCGACATTGCTGTGGCTTCATGTTCTTAAGAAAAAAGGCGTCCAT 1197
BSNT_00917___ 1198 ATTTCCTGGGGCACGTATTTTAAAACAGGAATTATCCTCACGATACCC-- 1245
||.||.|||||..|.||..|.|||.|.||||||||||||||.|| |||
BPUM_0303___a 1198 ATCTCTTGGGGGGCATACATGAAAGCCGGAATTATCCTCACCAT-CCCGA 1246
BSNT_00917___ 1246 -----------ACTTTATTGATCACACTTGTCGGCCTGTATATTTGGCT- 1283
||||||||| ||..|.|||.|.|||.|
BPUM_0303___a 1247 CCTTGATCCTTACTTTATTG------------GGGTTATATGTGTGGTTA 1284
BSNT_00917___ 1284 --GCTGATAATCCATTCTTGTTTCTAA 1308
||||||| ||| |||
BPUM_0303___a 1285 TGGCTGATA---CAT---------TAA 1299
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