Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00564 and BPUM_0297

See Amino acid alignment / Visit BSNT_00564 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence dna-align/BSNT_00564___cah.1.24716.seq
#    -bsequence dna-align/BPUM_0297___cah.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00564___cah-BPUM_0297___cah.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00564___cah-BPUM_0297___cah.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00564___cah
# 2: BPUM_0297___cah
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity:     676/999 (67.7%)
# Similarity:   676/999 (67.7%)
# Gaps:          84/999 ( 8.4%)
# Score: 2116.5
# 
#
#=======================================

BSNT_00564___      1 ATGCAACTATTCGATCTGCCGCTCGACCA-------ATTGCAAACA-TAT     42
                     ||||||.|.||.|||.|        ||||       ||..||||.| |||
BPUM_0297___c      1 ATGCAATTGTTTGATTT--------ACCATTAGATGATCTCAAAAAGTAT     42

BSNT_00564___     43 AAGCCTGAA-AAAACAGCACCGAAAGATTTTTCTGAGTTTTGGAAATTGT     91
                     ||.|| ||| ||||||||||.....|||||.||.||.||||||||...||
BPUM_0297___c     43 AAACC-GAAGAAAACAGCACGTCCTGATTTCTCAGACTTTTGGAAGGCGT     91

BSNT_00564___     92 CTTTAGAGGAACTTGCAA--AAGTCCAAGCAGA------ACCTGA--TTT    131
                     |..|.||.|||||  .||  ||||..|.|||||      ||.|||  .||
BPUM_0297___c     92 CGCTTGAAGAACT--GAACCAAGTGGAGGCAGAGCTAGCACTTGAACCTT    139

BSNT_00564___    132 ACAGCCGGTTGACTATCCTGCTGACGGAGTAAAAGTGTACCGTCTCACAT    181
                     |        |||.|||||.|...|.|||||.||.|||||.||.||.||.|
BPUM_0297___c    140 A--------TGATTATCCAGTAAAGGGAGTGAAGGTGTATCGCCTGACGT    181

BSNT_00564___    182 ATAAAAGCTTCGGAAACGCCCGCATTACCGGATGGTACGCAGTGCCTGA-    230
                     ||.|||||||.|||.|..|.||.|||...||.|||||.|||||.||.|| 
BPUM_0297___c    182 ATCAAAGCTTTGGACATTCTCGAATTGAAGGTTGGTATGCAGTACCAGAT    231

BSNT_00564___    231 CAAGGAAGGCCCGCATCCGGCGATGGTGAAATATCATGGCTACAATGCAA    280
                     ||| |.|||.|..||.||.||..|.||..|.|.|||.|||||.|||||.|
BPUM_0297___c    232 CAA-GCAGGTCTACACCCAGCACTCGTACATTTTCACGGCTATAATGCCA    280

BSNT_00564___    281 GCTATGATGGTGAGATTCATGAAATGGTAAACTGGGCACTCCATGGCTAC    330
                     |||||||.||.|..||||||||.||.||.||.||||||||.||||||||.
BPUM_0297___c    281 GCTATGACGGCGGCATTCATGACATTGTCAATTGGGCACTGCATGGCTAT    330

BSNT_00564___    331 GCCGCATTCGGCATGCTTGTCCGCGGCCAGCAGAGCAGCGAGGATACGAG    380
                     ||..|.||.||.|||||.|||||.||.|||....||||.||.||||.||.
BPUM_0297___c    331 GCGACGTTTGGTATGCTCGTCCGAGGTCAGGGCGGCAGTGAAGATAAGAC    380

BSNT_00564___    381 TATTTCACCGCACGGTCACGCTTTGGGCTGGATGACGAAAGGAATTCTTG    430
                     ..|..||||...|||.||.|||.||||.||||||||.||.||.||  ||.
BPUM_0297___c    381 AGTGACACCAGGCGGGCAGGCTCTGGGGTGGATGACAAAGGGCAT--TTT    428

BSNT_00564___    431 AT--AAAGATACATACTATTACCGCGGTGTTTATTTGGACGCCGTCCGCG    478
                     ||  |||||.||.||||||||.||.|||||||||||.||.||.||.||.|
BPUM_0297___c    429 ATCGAAAGAGACCTACTATTATCGAGGTGTTTATTTAGATGCGGTTCGAG    478

BSNT_00564___    479 CGCTTGAGGTCATCAGCAG--TTTCGACGAGGTTGATGAAACA-AGGATC    525
                     |.|||||.||.||  .|||  ||||...||.||.|||| |||| .||||.
BPUM_0297___c    479 CACTTGACGTGAT--TCAGTCTTTCCCAGAAGTGGATG-AACACCGGATT    525

BSNT_00564___    526 GGTGTGACAGGAGGAAGCCAAGGCGGAGGTTTAACCATTGCCGCAGCAGC    575
                     ||.|||...||.||||||||.||.||.|...||.|..||||.||.|||||
BPUM_0297___c    526 GGCGTGGTGGGCGGAAGCCAGGGTGGTGCACTAGCGGTTGCAGCTGCAGC    575

BSNT_00564___    576 GCTGTCAGACATTCCAAAAGCCGCGGTTGCCGATTATCCTTATTTAAGCA    625
                     .||.||||||||||||||.|.||..||.||.||||||||.||.|||...|
BPUM_0297___c    576 ACTTTCAGACATTCCAAAGGTCGTCGTGGCAGATTATCCGTACTTATCGA    625

BSNT_00564___    626 ACTTCGAACGGGCCATTGATGTGGCGCTTGAACAGCCGTACCTTGAAATC    675
                     |.||||||||.||..|.||||||||..|.||.|||||.||..|.||||||
BPUM_0297___c    626 ATTTCGAACGTGCAGTAGATGTGGCATTGGAGCAGCCTTATTTAGAAATC    675

BSNT_00564___    676 AATTCCTTCTTCAGAAGAAATGGCAGCCCGGAAACAGAAGTGCAGGCGAT    725
                     |||||.|.|||..|.|||||   ||||   ||..|||.||||     ||.
BPUM_0297___c    676 AATTCATACTTTCGCAGAAA---CAGC---GATCCAGCAGTG-----GAA    714

BSNT_00564___    726 GAA---------GACACTTTCA--TATTTCGATATTATGAATCTCGCTGA    764
                     |||         ||.||.||.|  |||||.|||.|.||.|||.|.||.|.
BPUM_0297___c    715 GAAAAGGCATTTGAAACGTTAAGTTATTTTGATTTGATCAATTTAGCCGG    764

BSNT_00564___    765 CCGAGTGAAGGTGCCTGTCC----TGATGTCAATCGGCCTGATTGA-CAA    809
                     ..|.|||||    ||.|.||    |.|||.|.|||||..||||.|| |||
BPUM_0297___c    765 ATGGGTGAA----CCAGCCCACATTAATGGCCATCGGTTTGATCGATCAA    810

BSNT_00564___    810 GGTCACGCCGCCATCCACCGTGTTTGCCGCCTACAATCATTTGGAAACAG    859
                      .|.||.||||||||.||.||||||||.|..|||||.|||||.|||||||
BPUM_0297___c    811 -ATTACCCCGCCATCTACTGTGTTTGCAGTATACAACCATTTAGAAACAG    859

BSNT_00564___    860 AGAAAGAGCTGAAGGTGTACCGCTACTTCGGACATGAGTATATCCCTGCT    909
                     |.|||||..|.||.|||||.||||||||.|||||.|||||.|||.|.|||
BPUM_0297___c    860 ATAAAGATTTAAAAGTGTATCGCTACTTTGGACACGAGTACATCTCGGCT    909

BSNT_00564___    910 TTTCAAACGGAAAAACTTGCTTTTTTTAAGCAGCATCTTAAAGGCTGA-    957
                     ||||||||.||.||.|||||.||.||..|..||||| ||||.|..|.| 
BPUM_0297___c    910 TTTCAAACAGAGAAGCTTGCCTTCTTACAAAAGCAT-TTAACGAATTAA    957


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