Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02285 and BPUM_0296
See
Amino acid alignment /
Visit
BSNT_02285 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02285___ykrU.1.24716.seq
# -bsequence dna-align/BPUM_0296___ykrU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02285___ykrU-BPUM_0296___ykrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02285___ykrU-BPUM_0296___ykrU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02285___ykrU
# 2: BPUM_0296___ykrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 915
# Identity: 483/915 (52.8%)
# Similarity: 483/915 (52.8%)
# Gaps: 264/915 (28.9%)
# Score: 1060.0
#
#
#=======================================
BSNT_02285___ 1 ATGAAATGGACGATAT----CTTGTCTTCAATTTGATATTTCATACGGCA 46
|||||| || |||||| |||.|.|| |.|||
BPUM_0296___y 1 ATGAAA--------ATCGCCCTTGTC--CAAATGGA-----CGTAC---- 31
BSNT_02285___ 47 AAACTTCGGAAA-----ATATAA------AAAAAGCTGA---ATTTTTCA 82
||| ||||..| ||.||| |||||||.|| ||||||
BPUM_0296___y 32 AAA--TCGGTGAACCTGATGTAAACTTTCAAAAAGCAGAAGCATTTTT-- 77
BSNT_02285___ 83 TCGAAAAAGAA------AGCAAACATGCTGATGTTCTTGTTCTGCCTGAA 126
|.||||| .||.|.||..|||||.|..|..||.|.||.|||
BPUM_0296___y 78 ----AGAAGAAGCGATCCGCCAGCAGCCTGATCTGATCATTTTACCCGAA 123
BSNT_02285___ 127 TTATGGACGACCGGATATGATCTGGCCAATCTTGATGAACTCGCTGATAA 176
.|.||||..|||||.||.|.||| ||||| |
BPUM_0296___y 124 ATGTGGAATACCGGTTACGCTCT------------TGAAC---------A 152
BSNT_02285___ 177 AGACGGCCGCTCCGCTCAGAGCTGGCTGAAGAAAACGG--------CAAA 218
|| |||.|| ||||.||.||.|.|||||| ||||
BPUM_0296___y 153 AG---------CCGATC--AGCTTGCGGATGTAAACGGTGAACGCACAAA 191
BSNT_02285___ 219 AAAACATGGTGTT-------------CATA---------------TTGTC 240
|.||| |.|| |||| ||.||
BPUM_0296___y 192 ACAAC----TTTTCTCTTCCTTTGCCCATAAGCACCAAGTGATTCTTATC 237
BSNT_02285___ 241 GCCGGATCGGT----------CGCTGTCAGGAAGAATTCTGATGTTTA-T 279
||||||...|| ||| .|| ||||| |..||.|.|.| .
BPUM_0296___y 238 GCCGGAAGTGTATTGAACAAGCGC--ACA-GAAGA--TGAGAAGATCACC 282
BSNT_02285___ 280 AATACAATGTACATC----GCGGATAAGGAAGGGC----AAATCATTAAA 321
||.||||||||.||| .|.|..|||| .|.|| |..|.||||
BPUM_0296___y 283 AACACAATGTATATCTTTAACCGCCAAGG-TGAGCTTTTAGTTGATTA-- 329
BSNT_02285___ 322 GAGTACAGA-AAAGCCCATCTTTTTCAGC-TGATGGATGAGCATCTGTAT 369
.|| |||...|| |||.|||.|| |.|||||||||||....|||
BPUM_0296___y 330 ------TGATAAAATTCA-CTTATTCCGCTTAATGGATGAGCACAACTAT 372
BSNT_02285___ 370 TTATCAGCCGGTTCCGAAGACGGAT--ACTTTG---AGCTTGACGGCGTC 414
|||.|.||.||| ||| |||||| | .|||||
BPUM_0296___y 373 TTAACCGCTGGT----------GATCAACTTTGTTTA-TTTGAC------ 405
BSNT_02285___ 415 AAAAGCTCAGGAT----------------TGATCTGTTACGATATCCGTT 448
.|.|.|.||||| |||||||.|||||..|.||.|
BPUM_0296___y 406 -TATGATGAGGATGTGAAGATCGGTGCGATGATCTGCTACGACCTTCGCT 454
BSNT_02285___ 449 TTCCGGAATGGATCAG------AAAACATACGACA--AAAGGCGCCAACG 490
||||| ||| |.||||...|.|| |||||.||.||.|
BPUM_0296___y 455 TTCCG--------CAGCTTTCTAGAACACTTGTCAACAAAGGGGCAAAGG 496
BSNT_02285___ 491 TGCTGTTTATTTCTGCGGAATGGCCTCTTC--CCCGCCTTGATCATTGGA 538
||||..|.|.|.|.|||.|||||| |.|| |..|..|.|||||||||.
BPUM_0296___y 497 TGCTTATCAATACGGCGCAATGGC--CGTCAGCAAGAGTGGATCATTGGC 544
BSNT_02285___ 539 AAAGCCTGCTTATTGCGCGGGCCATTGAAAACCAATGCTTTGTCGCAGCC 588
..|||.||||.||.||..|.||.||||||||.||.|.||||.| |..
BPUM_0296___y 545 GCAGCTTGCTCATCGCAAGAGCGATTGAAAATCAGTCCTTTAT----GAT 590
BSNT_02285___ 589 TGC----AATTGTACCGGTTCA-AATCCG-GATAATGAATTTGCAGGACA 632
||| ||..|.||.|| || ||.|.| ||.|.||||||..|.||.||
BPUM_0296___y 591 TGCTGTTAACAGAACAGG--CACAAGCAGAGACACTGAATTCCCTGGTCA 638
BSNT_02285___ 633 TAGCCTGATTATTGATCCATGGGGACG---TGTACTTGCTGAAGGCGGCC 679
|..|.||.|.|||||||||...||.|| |.|||| ||||.....||
BPUM_0296___y 639 TTCCATGGTGATTGATCCACTTGGCCGTATTTTACT---TGAAACAAACC 685
BSNT_02285___ 680 GGGAAGAAGGCATAGTCCGA----GCGGAAATCGACCTTCAAGAAAGCGC 725
..||.|||| |||.| .| |.|||.||.||.| ||.||..||.|.
BPUM_0296___y 686 ATGAGGAAG--ATATT--TATTATGGGGACATTGATC-TCCAGCTAGTGG 730
BSNT_02285___ 726 A-GAAGTTCGGGAGAGC--ATTCCTGTTTTCAATGATATCAGAAAA---- 768
| ||||| |.||.||| ||||||| ||||..||||..|
BPUM_0296___y 731 ATGAAGT--GAGACAGCAGATTCCTG-------TGATGACAGATCAGCGT 771
BSNT_02285___ 769 ---GATTTATATTAA 780
|||.|.|||||.
BPUM_0296___y 772 CTGGATATTTATTAG 786
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.