Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00563 and BPUM_0295
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:22
# Commandline: needle
# -asequence dna-align/BSNT_00563___ycgK.1.24716.seq
# -bsequence dna-align/BPUM_0295___ycgK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00563___ycgK-BPUM_0295___ycgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00563___ycgK-BPUM_0295___ycgK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00563___ycgK
# 2: BPUM_0295___ycgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1094
# Identity: 599/1094 (54.8%)
# Similarity: 599/1094 (54.8%)
# Gaps: 289/1094 (26.4%)
# Score: 1465.0
#
#
#=======================================
BSNT_00563___ 1 ------ATGGATATTAAAGTGATGGAATATGCAGTGGAA----ATTGCCC 40
.|||||||...|.||||||||||||...||||| || |
BPUM_0295___y 1 ATGAAAGTGGATATACGAATGATGGAATATGTTATGGAAGTGTAT----C 46
BSNT_00563___ 41 GGCGCCAAAGCTTTACAAAGGCGGCGGAACATCTTCATATCGCACAGCCG 90
|||...||||.||||||||.||.||.|||.|.|||||.||.||||||||.
BPUM_0295___y 47 GGCAGAAAAGTTTTACAAAAGCAGCAGAAGAGCTTCACATTGCACAGCCT 96
BSNT_00563___ 91 TCTCTCAGCCAGCAAATCAAAAAGCTTGAGGCTGAGCTGAGGCTTACCC- 139
|||.|.|||||.|||||.||.|||||.||.|..|| .|.||.|..||||
BPUM_0295___y 97 TCTTTAAGCCAACAAATAAAGAAGCTAGAAGAGGA-ATTAGACACACCCC 145
BSNT_00563___ 140 ---TTTTTC-ACAGATCCCATGGCTCTGTTACACTGACACCTCACGGCAG 185
||.||| |.|| .||||....||.||||..||||||||.||.||
BPUM_0295___y 146 TATTTATTCGAAAG----TATGGACAAGTCACACCCACACCTCAAGGGAG 191
BSNT_00563___ 186 GCGTTTCATTGAAAAAGCCGAGGACATCATTCGTTCCAG-----AGATGA 230
.||.||||||.|||..||.||| |.|||| ||..|| ||||||
BPUM_0295___y 192 TCGGTTCATTAAAAGGGCTGAG---AGCATT--TTGAAGGAAAAAGATGA 236
BSNT_00563___ 231 TTTGCTTCGGGAAATGCAGGAGAGATCA----------CAGGGAATCGGT 270
||||.|.||.||.||| ||||| |.|| ..|||||
BPUM_0295___y 237 TTTGTTGCGAGAGATG--GGAGA-AGCAGCTTATGAGGTGGGGAA----- 278
BSNT_00563___ 271 CA----TAAATTATCCATCGGGATTCCTGCTGTGACAGGGAGATATCTCT 316
| |.|| |||.||....||.||.||.||||||.|||||.|||
BPUM_0295___y 279 -AGAGCTGAA-----CATTGGAGCGCCAGCCGTCACAGGGGGATATGTCT 322
BSNT_00563___ 317 TTCCTCCGCTGCTGAGGCAG------------TTTTTGGC--GCGCTATC 352
|.|| ||| ||||||.| .|| ||||
BPUM_0295___y 323 TGCC-------------CAGTTTACTAAAAACTTTTTGTCAAACG-TATC 358
BSNT_00563___ 353 CTCATGTGGAGGTTCAGCTTGTTGAAAAAGATCCGGTTTCATTAG--AGG 400
|||||||..|.||||..||..|.|||.||...|| ||.|.|| ||.
BPUM_0295___y 359 CTCATGTTCACGTTCGACTAATAGAAGAATCACC----TCGTGAGCTAGA 404
BSNT_00563___ 401 AGATGAC-------GGCAAAGGGAGAAGTT-GACCTTT--CTGTTTTATC 440
|.| || ||| .|...|||| || ||| ||.|||||||
BPUM_0295___y 405 AAA--ACTTCTATTGGC----TGGTCAGTTGGA--TTTGGCTATTTTATC 446
BSNT_00563___ 441 CTTGCCGATCGAGGATGAACGGCTCTCCATT---------ACACCTTTGC 481
..|||||.|||||.||||| .|||| |||| .|||
BPUM_0295___y 447 TATGCCGGTCGAGCATGAA-------TCATTGAAAACGAAACAC--ATGC 487
BSNT_00563___ 482 TCACGGAACCGATTGTTCTCGCAGTGCCGAAGGAAAAA------CAAAGG 525
|.||.||.|||.||.||||.|||||.||| ..| |||...
BPUM_0295___y 488 TGACAGAGCCGCTTCTTCTTGCAGTTCCG------CCATCTGCTCAACCT 531
BSNT_00563___ 526 TGGATGCCGCCGGAATTGGTCGCGCTGATTGA-GAAAGCGCTGGAAGGTA 574
|||.|.|.|.||||||||..||...|.||..| .|||| ||.|.
BPUM_0295___y 532 TGGTTACAGGCGGAATTGAACGATATCATCCATCAAAG-------AGATC 574
BSNT_00563___ 575 AG-GAGGGACGCCAGCCGTGTGTGCCG------CTTGACATGGTAAGGAA 617
|| .|||||| |||.||| ||| |.|.||| |
BPUM_0295___y 575 AGAAAGGGAC----------TGTTCCGTTTCGCCTT----TTGGAAG--A 608
BSNT_00563___ 618 CGTGCCCTTTATTCTGTTAAAAGAAGGCTTCGGTTTTC-GCAGGACAGTT 666
||...|.||||||.||.|.|||||.||.|..||.||.| ||| |||.
BPUM_0295___y 609 CGCCTCATTTATTATGCTGAAAGAGGGATATGGCTTCCGGCA----AGTG 654
BSNT_00563___ 667 CTC---GATCTCTGTGCGGAAAGC-----GGCTTTAAGCCGAATGCT-GC 707
.|| ||.|||||| .|.| ||||||.||||||| |.| .|
BPUM_0295___y 655 GTCACAGAACTCTGT-----CATCATCATGGCTTTCAGCCGAA-GATAAC 698
BSNT_00563___ 708 CTTTAAGACGAGCCATATTGAAACCGCCCA---ATCTCTTGTGGCT---- 750
||||.|.||.||.||||||.||||.||.|| || ||| |
BPUM_0295___y 699 CTTTGAAACAAGTCATATTCAAACAGCGCAGGCAT------TGG-TCAAA 741
BSNT_00563___ 751 AACGGTTTAGGTGTGACAATGGCACCGAATATGGT--CAGAAG-GGATAA 797
||.||..|||||||||||.|.|..|||||.||||| ||.||| ||| ||
BPUM_0295___y 742 AATGGGCTAGGTGTGACAGTTGTGCCGAAAATGGTGGCACAAGAGGA-AA 790
BSNT_00563___ 798 AGATCCGGGGGTGATCTATTT----ATCGATTCAATCCGCG-CCATCACG 842
.||.| |..||.|..||||| ||.||||||| | |||.|.||
BPUM_0295___y 791 GGAAC--GAAGTCACTTATTTGAAAATTGATTCAA-----GTCCAACCCG 833
BSNT_00563___ 843 AACCCTCGTCTTTGTCT-TTTTAAAGAACCGCTATGTCAGTCTGA---CC 888
.||.||.||.||||..| |.|..||||| .|.|||.|.| .|| ||
BPUM_0295___y 834 CACACTTGTGTTTGCATATGTGGAAGAA-AGGTATTTAA---CGAAAGCC 879
BSNT_00563___ 889 GCCCAGGCCTTTATGGAACT-------AACCCGGGAAAGTCTTAAACAAA 931
||.||.||..|.|||||.|| ||.|.||.|||..|||||
BPUM_0295___y 880 GCTCAAGCACTAATGGACCTTTATCAAAATCAGGAAAATACTTAA----- 924
BSNT_00563___ 932 CGTTTGATGAAGGCTGTCTGGGAAACAAAGATGAAAATATTTAG 975
BPUM_0295___y 924 -------------------------------------------- 924
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