Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00555 and BPUM_0289

See Amino acid alignment / Visit BSNT_00555 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:21
# Commandline: needle
#    -asequence dna-align/BSNT_00555___nadE.1.24716.seq
#    -bsequence dna-align/BPUM_0289___nadE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00555___nadE-BPUM_0289___nadE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00555___nadE-BPUM_0289___nadE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00555___nadE
# 2: BPUM_0289___nadE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 844
# Identity:     608/844 (72.0%)
# Similarity:   608/844 (72.0%)
# Gaps:          47/844 ( 5.6%)
# Score: 2156.0
# 
#
#=======================================

BSNT_00555___      1 ATGAGCATGCAGGAAAAGATTATGCGTGAGTTACATGTGAAGCCCTCAAT     50
                     |||||..|||||.||||.||.|..|..|||||.||||||.||||||||||
BPUM_0289___n      1 ATGAGTTTGCAGAAAAAAATCAGCCAAGAGTTGCATGTGCAGCCCTCAAT     50

BSNT_00555___     51 TGATCCAAAGCAAGAAATTGAGGACCGAGTCAATTTTTTAAAACAATATG    100
                     |||.||.|||||.||.||.||..|.||.||....||||||||..|.||..
BPUM_0289___n     51 TGACCCGAAGCAGGAGATCGAAAAACGGGTTGGATTTTTAAAGGACTACT    100

BSNT_00555___    101 TAAAGAAAACTGGTGCTAAAGGCTTTGTATTGGGAATCAGCGGCGGCCAG    150
                     |.||.|||||.|||||.|||||.||.||..|.||.||.||||||||.|||
BPUM_0289___n    101 TGAAAAAAACCGGTGCGAAAGGATTCGTCCTCGGCATTAGCGGCGGGCAG    150

BSNT_00555___    151 GATTCAACACTTGCGGGAAGACTCGCTCAGCTTGCGG----TGGAGAGCA    196
                     ||||||||.||.||.||..|.||.||.|||||.||.|    ||.|..||.
BPUM_0289___n    151 GATTCAACGCTCGCTGGCCGTCTTGCACAGCTCGCTGCATCTGAACTGCG    200

BSNT_00555___    197 TTCGCGAGGAGG--GCGGAGACGC--TCAATTTATCGCTGTCCGTCTTCC    242
                     |   |.||.|||  ..|.|||.||  ||  |||||.||.||.|||||.||
BPUM_0289___n    201 T---CAAGAAGGAAAAGAAGATGCCGTC--TTTATTGCGGTGCGTCTCCC    245

BSNT_00555___    243 GCATGGCACACAGCAGGATGAAGACGATGCCCAGCTTGCTTTGAAGTTTA    292
                     |||||||...|||||||||||||..|||||.|||||.|||||....||||
BPUM_0289___n    246 GCATGGCGTGCAGCAGGATGAAGGTGATGCACAGCTCGCTTTATCATTTA    295

BSNT_00555___    293 TTAAGCCGGATAAATCATGGAAGTTTGATATTAAATCAACAGTCAGCGCT    342
                     ||.|||||||.||.||.|||||.|.|||||||             ||||.
BPUM_0289___n    296 TTCAGCCGGACAAGTCGTGGAAATATGATATT-------------GCGCC    332

BSNT_00555___    343 T-----------TTTC--TGATCAGTATCAGCAGGAAACAGGCGATCAGC    379
                     |           .|||  |||.||.|||||..|.||.|||||||..|.|.
BPUM_0289___n    333 TGCCGTGACGGCATTCAGTGAACAATATCAAAAAGACACAGGCGGACCGT    382

BSNT_00555___    380 TGACTGACTTTAATAAAGGAAACGTAAAAGCAAGAACAAGAATGATCGCG    429
                     ||.||||||||||||||||.||.||.||||||.|.|..||||||||||||
BPUM_0289___n    383 TGTCTGACTTTAATAAAGGGAATGTCAAAGCACGCATGAGAATGATCGCG    432

BSNT_00555___    430 CAATACGCGATCGGCGGCCAGGAAGGCCTTCTTGTGTTAGGAACAGACCA    479
                     |||||.||..||||.||..|.|||||..|.|||||..|.||.|||||.||
BPUM_0289___n    433 CAATATGCTGTCGGGGGAGAAGAAGGATTACTTGTCATTGGTACAGATCA    482

BSNT_00555___    480 TGCTGCTGAAGCAGTGACTGGTTTCTTTACGAAGTACGGTGACGGCGGAG    529
                     |||.||.||||||||.|||||.|||||.||||||||.|||||||||||.|
BPUM_0289___n    483 TGCAGCCGAAGCAGTCACTGGGTTCTTCACGAAGTATGGTGACGGCGGTG    532

BSNT_00555___    530 CAGACCTCCTGCCGCTGACAGGCTTGACGAAGCGCCAGGGAAGAACCCTG    579
                     |||||.|.||.|||||.|||||..|||||||.|||||.|||.|.||.|||
BPUM_0289___n    533 CAGACGTTCTCCCGCTCACAGGTCTGACGAAACGCCAAGGACGGACGCTG    582

BSNT_00555___    580 CTGAAAGAGCTGGGTGCACCGGAACGCTTATACTTAAAAGAGCCGACTGC    629
                     ||..|||.||||...|||||.||.||..||||||||||..|.||.||.||
BPUM_0289___n    583 CTAGAAGCGCTGCAAGCACCAGAGCGTCTATACTTAAAGAAACCAACAGC    632

BSNT_00555___    630 CGATCTGCTCGACGAAAAACCGCAGCAGTCGGATGAAACAGAGCTTGGCA    679
                     |||||||||.|||||.|||||.|||||..|||||||||||||.||.||||
BPUM_0289___n    633 CGATCTGCTGGACGACAAACCTCAGCAAACGGATGAAACAGAACTCGGCA    682

BSNT_00555___    680 TTTCCTACGACGAGATTGACGATTATCTCGAAGGAAAAGAAGTATCAGCG    729
                     ||.|.||..|.||.|||||.|||||..|.|||||.||....||.||||..
BPUM_0289___n    683 TTACGTATAATGAAATTGATGATTACTTAGAAGGTAAGCCCGTGTCAGAA    732

BSNT_00555___    730 AAAGTATCAGAAGCGCTGGAAAAACGCTA----CAGCATGACTGAACATA    775
                     .|||.|..|||||||.|.|||||.|||||    ||  ||  |.||.||||
BPUM_0289___n    733 CAAGCAGTAGAAGCGATTGAAAAGCGCTATGTTCA--AT--CAGAGCATA    778

BSNT_00555___    776 AACGCCAGGTTCCGGCGTCTATGTTTGATGACTGGTGGAAATAA    819
                     ||||.||.||.||.||.|||||||||||||||||||||||||||
BPUM_0289___n    779 AACGTCAAGTACCCGCTTCTATGTTTGATGACTGGTGGAAATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00555 and BPUM_0289

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
