Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00545 and BPUM_0286
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00545___ycgG.1.24716.seq
# -bsequence dna-align/BPUM_0286___yqcI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00545___ycgG-BPUM_0286___yqcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00545___ycgG-BPUM_0286___yqcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00545___ycgG
# 2: BPUM_0286___yqcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity: 505/848 (59.6%)
# Similarity: 505/848 (59.6%)
# Gaps: 163/848 (19.2%)
# Score: 1342.0
#
#
#=======================================
BSNT_00545___ 1 TTGAGGTGGATCAATGG------TGAATGGGATTTACACCAAAAGTTTTC 44
|||| ||.||| |.|||||||..|
BPUM_0286___y 1 -------------ATGGCCCAGTTGTATG---------CAAAAAGTTGCC 28
BSNT_00545___ 45 TGGA---------ACGTATTCAGGAGAGCTTCCTGAATGGCAA--AGAAT 83
|.|| ||| .|||..||| .|||||| || ||.||
BPUM_0286___y 29 TTGATCAAAATCTACG--ATCACTAGA------AGAATGG-AAGCAGGAT 69
BSNT_00545___ 84 CGCTTTTGAGCTGCTGGCAGAAACTCTGGGGGACGACGCGGATACGTTTC 133
||||||..|||..|.|.|||.|...|.||.||.||.||.|||||.||.|
BPUM_0286___y 70 -GCTTTTACGCTATTTGGAGAGATGGTAGGAGATGAGGCAGATACATTCC 118
BSNT_00545___ 134 CGTGCATTCCCGGACGCCAGGCGTTTCTGACT-GATCAGCTTCGGATTGC 182
|.||..|.||.|||.|.||||.|||| |..|| |||||..|.||...||.
BPUM_0286___y 119 CTTGTGTCCCAGGAAGACAGGGGTTT-TTTCTCGATCATTTACGCTATGG 167
BSNT_00545___ 183 TTTTGCCGGAGATCCGCGGGAAAACCGCACAGC---GGAGGAACTGGCTC 229
.||||..||.|||| |..|||||..|.| ||| .||.|||.|.||.|
BPUM_0286___y 168 GTTTGTGGGTGATC--CAAGAAAAGAGGA-AGCTGTTGAAGAATTAGCGC 214
BSNT_00545___ 230 CGTTGCTTGCGGAGTACGGCAAG-ATATC--------GCG--GGACACGG 268
.|.|||| ||| || ||||| ||| .||.||||
BPUM_0286___y 215 AGCTGCT----GAG-------AGAATATCAAAGCTGTGCGAAAGAAACGG 253
BSNT_00545___ 269 GAAAATACGCATCCCTCGT-TGTG-TTGTTTGATACACCGGAAGATTTGG 316
|..||||.||.||..| | |.|| ||.|||||.||||||.|.|||||..
BPUM_0286___y 254 GTCAATATGCTTCATT--TATATGCTTTTTTGAAACACCGCAGGATTTAA 301
BSNT_00545___ 317 CGGAGCATTA--TTCGATTGAAGCGTATGAAGAGCTGTTTTGG-CGCTTT 363
.||| | |||.|||||||.||.|||..|||.||||||| |.||..
BPUM_0286___y 302 AGGA-----AAGTTCAATTGAAGAGTTTGAGCAGCAGTTTTGGTCACTGC 346
BSNT_00545___ 364 TTAAATAGACTGAGTCATCAAGACGAAA-AAGAA------TGGCCGGAAG 406
||.|| .||||| ||||| |||| |.||| |||||.||.|
BPUM_0286___y 347 TTCAA-CGACTG---CATCA----GAAAGATGAAGTGCCGTGGCCTGAGG 388
BSNT_00545___ 407 ACATTCCGGCCGATCCCGAGCATTATAAATGGGAGTTTTGTTTTGACGGC 456
|.|||||....|||.|..|.|||.||.|.|||||||.|||.|||.|.||.
BPUM_0286___y 389 ATATTCCACTAGATACTCATCATCATGAGTGGGAGTATTGCTTTCATGGG 438
BSNT_00545___ 457 GAGCCGTACTTTCTTCTCTGCGCTACACCGGCGCACGAGGCGAGAAAAAG 506
||..||||.|||.||.|.|||.|.||||||||.||..||...||||||||
BPUM_0286___y 439 GAAGCGTATTTTATTTTATGCTCCACACCGGCTCATAAGCTCAGAAAAAG 488
BSNT_00545___ 507 CCGAAGCTTTCCTTTTTTTATGATCACGTTTCAGCCAAGGTGGGTGTTTG 556
|||...||||||||.|.|..|.||..|.||||||||.||.||||||||||
BPUM_0286___y 489 CCGCCACTTTCCTTATGTCTTAATGGCATTTCAGCCTAGATGGGTGTTTG 538
BSNT_00545___ 557 AGGACCTAAATGGATCAACTGCA--TTTGGCCGTAACATGAG-CAGGCTG 603
||.|..|.||||||||.|| || |||||.|..||.||||| |||
BPUM_0286___y 539 AGAAATTGAATGGATCGAC--CAAGTTTGGTCAAAAAATGAGTCAG---- 582
BSNT_00545___ 604 ATCCGATCTCGTT----------TAGAGGCCTATGATCAGGCTC-CGATT 642
|||||| |..|.||.||||||.||| || .|.||
BPUM_0286___y 583 -------CTCGTTCGCAAGCGGCTCAAAGCGTATGATGAGG-TCGGGGTT 624
BSNT_00545___ 643 CACCCGCAATTAGGCTGGTACGGAG----GAAAAGATAATCGTGAATGGA 688
|||||...||||...||||||||.| || .|||||.||||||||
BPUM_0286___y 625 CACCCATCATTAAAATGGTACGGTGATCCGA----CTAATCATGAATGGA 670
BSNT_00545___ 689 AGCAGTATTTCCTCCGTGATGA------CGAAAAACAGGTAT---CGAAG 729
||||.||.||.||||..||||| .||.||||..|..| |.||.
BPUM_0286___y 671 AGCAATACTTTCTCCCAGATGAAGAGGCGGAGAAACCTGCCTCCGCCAAA 720
BSNT_00545___ 730 TGCCCGTTTTCTTATTTAAAGAACATGTTCAACAAAATGAAATAA--- 774
||.||.|||.||...|||||.|||||| |||||||.|
BPUM_0286___y 721 TGTCCTTTTACTGCATTAAAAAACATG---------ATGAAATTATGA 759
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