Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01794 and BPUM_0279
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_01794___yhjM.1.24716.seq
# -bsequence dna-align/BPUM_0279___yhjM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01794___yhjM-BPUM_0279___yhjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-BPUM_0279___yhjM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: BPUM_0279___yhjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity: 656/1067 (61.5%)
# Similarity: 656/1067 (61.5%)
# Gaps: 154/1067 (14.4%)
# Score: 1861.5
#
#
#=======================================
BSNT_01794___ 1 ATGCCTACAATTGATGAAATAGCAAAATTATGCAATGTGTCTAAAACCAC 50
|||..|||||||.|||||||.||.|||...|||...||.||.|..|||||
BPUM_0279___y 1 ATGTGTACAATTTATGAAATTGCCAAACGCTGCGGGGTTTCAACGACCAC 50
BSNT_01794___ 51 AGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAAGAAAAAAGAG 100
.||.||.|||||..|||||.|||||||.||||||||..|.|||||..|..
BPUM_0279___y 51 CGTTTCCAGAGTGCTGAATCATCATCCTTATGTGTCAGAGGAAAAGCGCC 100
BSNT_01794___ 101 ATATGATCTTAAAGGCAATTAACGAACTTGACTACACTCCCAATTATTTA 150
|..|.||.|||.|||..||.||.|||.|.||.||.||.||.|.||....|
BPUM_0279___y 101 AGCTCATATTACAGGTGATGAAGGAAATGGAATATACACCGAGTTCAGCA 150
BSNT_01794___ 151 GCTCGGAATTTTAGGAGAAATAAGACACAAACGATAGCTTTATCGGTTCC 200
|||||.|.|.|..|...|.||.|||||.||||.||.|||.|.||.| |||
BPUM_0279___y 151 GCTCGCACTCTACGTTCACATCAGACAAAAACCATTGCTGTGTCTG-TCC 199
BSNT_01794___ 201 GAG-TATCGACCATCCATTTTTTGCTCAATTAATAAAAGGGGTCTCTCAT 249
.|| |.|.||||||||.||||||||.||||||||.|||||..||||..|.
BPUM_0279___y 200 CAGCTGTGGACCATCCTTTTTTTGCACAATTAATTAAAGGCATCTCAAAA 249
BSNT_01794___ 250 GAAGCACTGTTTAAGAATTACAAGG---TA-----ATTGTATTTCAGACC 291
||||||.|| || .||||| || ||.||..|||||||.
BPUM_0279___y 250 GAAGCATTG-----GA---CCAAGGCTATAAAGCCATCGTGCTTCAGACG 291
BSNT_01794___ 292 TTTTATGACAAACAGACAGAGCTAGAATTATTAGAG-------------- 327
|||||| ||| ||||..||||||
BPUM_0279___y 292 TTTTAT----------CAG-----GAATCTTTAGAGCTTGAAGGGCTTCA 326
BSNT_01794___ 328 -TTATTGAAACATAA-AGAAGTGGATGGTATTATTCTTGGAACTTTAGAA 375
||||| |||.|.|| ||||||.|||||..|.|||.|.||..|.||||||
BPUM_0279___y 327 ATTATT-AAAAAGAAGAGAAGTAGATGGAGTCATTTTAGGGGCATTAGAA 375
BSNT_01794___ 376 AATGAATGGGATCAGATATCCCCTTTCTTAAAGTATGGTCCTATCTTATT 425
|||..||||||..||||....||.||.||||.|.|.||.|||| ||.|.
BPUM_0279___y 376 AATCCATGGGAAAAGATTGAGCCATTTTTAACGAACGGCCCTA--TTGTC 423
BSNT_01794___ 426 ATG--TAATGAATATCATCACTCAGCGGACATCACGATAATTGGGTATGA 473
||| .||||||||||||||..||||.|||||..||||.|||||.||.||
BPUM_0279___y 424 ATGGCGAATGAATATCATCAAACAGCAGACATTCCGATTATTGGATACGA 473
BSNT_01794___ 474 TGAATTTGAAGCTACATACATGGGGGT--AGTACATTTAATTGAAAGAGG 521
|||...|||||||.|.||.|..|..|| |.||| ||.|||.|....||
BPUM_0279___y 474 TGAGCGTGAAGCTGCCTATAAAGCAGTTGACTAC--TTGATTCAGTCGGG 521
BSNT_01794___ 522 GCATAAAAAAATTGGGTTTTGTTTTGATACTCCATATAGC---GAAGCTC 568
||.||||...||.||||||||.||||||| ||.|.||| |||||.|
BPUM_0279___y 522 GCGTAAATCGATCGGGTTTTGCTTTGATA---CAGAAAGCAGTGAAGCGC 568
BSNT_01794___ 569 AATGTCAGAGGAAAGAGGGTTATTTGAAAGCTTT------ACAAGATTAC 612
|....||.||||||.||||.|||.|..|.|||.| .||.|
BPUM_0279___y 569 AGAAACAAAGGAAACAGGGCTATCTAGACGCTCTTTCTGCCCATG----- 613
BSNT_01794___ 613 GATT-----TACATCATAGAAGCGAATGGATATTCGGCGAAATGTTTAAT 657
|.|| |.|||.| |||.|||.|.|||||.||....||.|..
BPUM_0279___y 614 GCTTGCCGCTGCATGA------CGATTGGTTGTTCGGTGAGGCCTTCACC 657
BSNT_01794___ 658 ATCGAGGATGGCTTTCGTGTTTTTCATAAGATAAAGGATCTAA---AGGA 704
||.||.||||||||||| || |||.||||.|.| |.||
BPUM_0279___y 658 ATTGAAGATGGCTTTCG--------AT----TAATGGATATCATCCACGA 695
BSNT_01794___ 705 CA--------GACCCTCA-GCAATATTTACAGGAAATGATCAAGTCGCCG 745
|| |..|||.| ||.||.||.||.||.||||||||||||||.|
BPUM_0279___y 696 CATGAAAAATGCACCTGATGCTATTTTCACCGGTAATGATCAAGTCGCTG 745
BSNT_01794___ 746 CAGGGATTATTAAACAGGCGATGAAAAATGGCTTTAAAGTTCCAGAAGAC 795
|.||..|.||||||||.||.||...|.||||.|.|.|..||||..|.||.
BPUM_0279___y 746 CTGGACTCATTAAACAAGCCATTTCATATGGTTATCACATTCCTAAGGAT 795
BSNT_01794___ 796 TTAGCTGTAATTGGTTTTGACAACCAATTGATCTGCCAAGTCGTTA---- 841
.||||.||.||.||.|.||||||.|||...||.|||.| |.||
BPUM_0279___y 796 CTAGCGGTGATCGGCTATGACAATCAAGACATTTGCGA----GGTAACAG 841
BSNT_01794___ 842 CTCCGACCATAACAACAATTGATATCCCCGTAATAGAATTAGGTCAACAG 891
||||.||.||.||.||||||||.|||||..|..||||..||||.||.|.|
BPUM_0279___y 842 CTCCAACGATCACCACAATTGACATCCCGATCGTAGAGCTAGGCCAGCGG 891
BSNT_01794___ 892 GCTGTGTTGAAAATCATCGAG-TCCATTTCGGGTAATGCCA--------- 931
.|||||..|.||||.|||||| ||| |||.|
BPUM_0279___y 892 TCTGTGCAGCAAATGATCGAGCTCC-----------TGCTAGACCAAAAA 930
BSNT_01794___ 932 -CTTTA-------AACAGAAGAATTATTAAACTGCCAACAAAGCTTATTA 973
|.||| |||| |||..|.||.||.||...|||..|.|
BPUM_0279___y 931 CCATTACAGCGTGAACA-------TATCCAGCTACCTACCCGGCTCGTGA 973
BSNT_01794___ 974 TAAGAGAATCAACGTAA 990
.|||.|||||.||.|||
BPUM_0279___y 974 CAAGGGAATCGACATAA 990
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