Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00516 and BPUM_0263
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:20
# Commandline: needle
# -asequence dna-align/BSNT_00516___yceF.1.24716.seq
# -bsequence dna-align/BPUM_0263.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00516___yceF-BPUM_0263.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00516___yceF-BPUM_0263.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00516___yceF
# 2: BPUM_0263
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity: 573/801 (71.5%)
# Similarity: 573/801 (71.5%)
# Gaps: 48/801 ( 6.0%)
# Score: 1931.0
#
#
#=======================================
BSNT_00516___ 1 TTGGACTTTTTACATCATATTTTGTCTACGTATGCTTCATTTTTCGATTG 50
||||||.||||..|.|||||.|||...||||||||.||.|||||.|||||
BPUM_0263 1 TTGGACATTTTGAAACATATGTTGGACACGTATGCCTCGTTTTTTGATTG 50
BSNT_00516___ 51 GAAAATGTGGGGGGAAGTTCTGACGGATCCTGTTTCCTGGGGTTTGATCG 100
|.|.|||||||..||.||..|.||..|.|||||.||.|||||..|.||.|
BPUM_0263 51 GCATATGTGGGCAGAGGTATTAACAAACCCTGTCTCTTGGGGGCTCATTG 100
BSNT_00516___ 101 GTTCCCTTGTTGTTCTGGAAGGCCTTTTATCGGCCGATAACGCGCTTGTT 150
|..||||||||||.||.|||||..|.|||||.||.||||||||.|||||.
BPUM_0263 101 GGACCCTTGTTGTGCTTGAAGGATTGTTATCAGCAGATAACGCACTTGTA 150
BSNT_00516___ 151 CTTGCGGTCATGGTTAAACACCTGCCGGAAAAACAGCGGAAAAAAGCGTT 200
.|.||.||||||||.||||||.|.||.|||||.|||||.|||||.||.||
BPUM_0263 151 TTAGCCGTCATGGTGAAACACTTACCAGAAAAGCAGCGTAAAAAGGCATT 200
BSNT_00516___ 201 AACGTATGGTTTGTTTGGAGCTTATATTTTCAGGTTTATTTTTATCGGGC 250
|||.||.||.||..||||.||||||.|.|||.|.|||.|.||.||.||..
BPUM_0263 201 AACCTACGGATTAATTGGCGCTTATTTCTTCCGTTTTCTATTCATTGGCG 250
BSNT_00516___ 251 TCGGTATGCTTCTCATTAAATTCTGGTGGATCAAGGTGCTTGGCGC-GC- 298
|.||.|||||.||.|||||.|||||||||||.|||||.||.||.|| ||
BPUM_0263 251 TAGGGATGCTGCTGATTAAGTTCTGGTGGATTAAGGTTCTCGGAGCTGCA 300
BSNT_00516___ 299 --TTTACCTGGCTTGGCTCGTCATTAAGCACTTCTGGATAGGCGAAAAAG 346
|||| ||.|||||.||||||||||||||||||.||||.||....|
BPUM_0263 301 TATTTA----GCATGGCTTGTCATTAAGCACTTCTGGTTAGGTGACGGCG 346
BSNT_00516___ 347 AAGAGGAAGCGGACGGCATCAAGAAAAA------CTCTTGGATGGTCCGC 390
|.||.||||| ||.||.|| .|||||| | ||||||.|.||.
BPUM_0263 347 ATGATGAAGC-GAAGGAAT--TGAAAAAAGAAGGC---TGGATGATTCGT 390
BSNT_00516___ 391 ACGTTCGGGATCTTCTGGGCGACTGTCATTTCAGTAGAATTAATGGATCT 440
...||.||..|.||||||||.||.||.|||||.||.|||.|.|||||.||
BPUM_0263 391 GTATTTGGCGTGTTCTGGGCAACCGTTATTTCTGTGGAAATTATGGACCT 440
BSNT_00516___ 441 TGCCTTCTCTGTGGACAGCATCCTGGCCGCGTTTGCAGTATCTGAAAAAG 490
|||||||||.||||||||.||.||.||.||.||.||.||||||||..|||
BPUM_0263 441 TGCCTTCTCGGTGGACAGTATTCTTGCGGCATTCGCTGTATCTGAGGAAG 490
BSNT_00516___ 491 TATGGGTGCTTCTGATCGGCGGTATGCTTGGTATTTTAATGATGCGTACA 540
|||||.|.||.||..|.|||||.||||||||||||.|.||||||||||||
BPUM_0263 491 TATGGATTCTGCTTTTAGGCGGAATGCTTGGTATTCTCATGATGCGTACA 540
BSNT_00516___ 541 GTGGCAAAAGTGTTCCTTGTGCTGATTGATAAAATTCCTGAGCTGGAAAA 590
||||||.|..|.||||||||.||.|||||....|||||||||||.||.||
BPUM_0263 541 GTGGCACAGTTATTCCTTGTCCTCATTGACCGTATTCCTGAGCTTGAGAA 590
BSNT_00516___ 591 CACAGC----ATTCGTGTTAATCGGCATTATCGCGCTGAAAATGGCGGGG 636
.||.|| |||| |.|||||.|||||.||..|.||||| |||
BPUM_0263 591 TACCGCGTTTATTC----TCATCGGGATTATTGCCATCAAAAT----GGG 632
BSNT_00516___ 637 ----AGCGCTTTCCATTACGAAATGCCGCACTC-TGTATTCTTCATCATC 681
||.|||..||||...|||||.||||| || ||.||||||....||.
BPUM_0263 633 CTTAAGTGCTGCCCATATTGAAATTCCGCA-TCTTGCATTCTTTGCGATT 681
BSNT_00516___ 682 ATTATCGCT-GCATTT-GCGGTAACATTGATCATTCACTACATCAATAAA 729
||||| .|| ||.||| .||| .||.||.||..||||..|.||||||||.
BPUM_0263 682 ATTAT-TCTAGCGTTTATCGG-GACGTTTATTGTTCATAAAATCAATAAG 729
BSNT_00516___ 730 CAAAAGC----AGGTGCG-CGAAC-AAACAGCCGCTTCAAAAGAAGAATA 773
.|.||.| ||.||.| |.||| ||.|.||.|||||||||||||||||
BPUM_0263 730 AAGAAACATCAAGATGTGACAAACGAAGCTGCAGCTTCAAAAGAAGAATA 779
BSNT_00516___ 774 A 774
.
BPUM_0263 780 G 780
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