Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00492 and BPUM_0255
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00492___ycdA.1.24716.seq
# -bsequence dna-align/BPUM_0255___ycdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00492___ycdA-BPUM_0255___ycdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00492___ycdA-BPUM_0255___ycdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00492___ycdA
# 2: BPUM_0255___ycdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1211
# Identity: 703/1211 (58.1%)
# Similarity: 703/1211 (58.1%)
# Gaps: 280/1211 (23.1%)
# Score: 1892.0
#
#
#=======================================
BSNT_00492___ 1 TTGAGGAGGAAAAATGAATGTTTCAGAAAAAAAACGTA-CGCTGTTT-TC 48
|||||| |||||.||..|| |.|||||| |.
BPUM_0255___y 1 -----------------ATGTTT---AAAAAGAAATTATCCCTGTTTCTT 30
BSNT_00492___ 49 CTAATTCTTCTG-----CTGATGATGTTTACAGCTGCTTGTTCCGGCAGC 93
|||| ||||.|| |||.|| |..|.|||||||||
BPUM_0255___y 31 CTAA-TCTTGTGTGTCACTGTTG----TCGCTGCTGCTTGT--------- 66
BSNT_00492___ 94 AAAACAAG-CGCGGAGAAGAAAGAATCAG----AAACAGAAAAAAGCTCA 138
|| .|.|||.|||||| |.|||| || ||.||||||
BPUM_0255___y 67 ------AGTGGTGGAAAAGAAA-AGTCAGCTGCAA--AGGAAAAAG---- 103
BSNT_00492___ 139 GATATAGCTCAAGTCAAAATC-------------------AAGG----AT 165
||| ||||||| |||| |.
BPUM_0255___y 104 ---ATA--------CAAAATCCCTTGATTCAGCAGAGGTAAAGGTAGAAA 142
BSNT_00492___ 166 GTCTCT---TATACGCTTCCGTCTAAATATGATA----AGTCCACTTCAG 208
|| .|| ||.||..|.||..||.||||.|||| .||.|| .|
BPUM_0255___y 143 GT-GCTGAGTACACATTACCACCTCAATACGATACATCTGTACA----GG 187
BSNT_00492___ 209 ATGACCAGCTTGTGTTAAAAGTCAATGTCGCGGTGAAAAACA-CAGGAAA 257
||||.|||..|||..|||||||.||.||..|.||.|||||.| || |.||
BPUM_0255___y 188 ATGATCAGTATGTACTAAAAGTGAACGTATCTGTAAAAAATATCA-GCAA 236
BSNT_00492___ 258 AGACCCGCTGAATGTAGACAGTATGGATTTCACATTGTATCAAGGTGATA 307
|||.||.||.|||||.||.|..|...|.|||||..|.||.||||.|||..
BPUM_0255___y 237 AGAGCCTCTAAATGTTGATAAAAGCAACTTCACGCTTTACCAAGATGACT 286
BSNT_00492___ 308 CCAAAATGTCT--GA-CACAGACCCTGAAGACTATAGCGAAAAGCTTCAA 354
|..||.||||| || |.|| ||.||.||.||.|.|| ||
BPUM_0255___y 287 CACAAGTGTCTACGATCTCA---CCAGATGATTACAACG---------AA 324
BSNT_00492___ 355 GTCAGCACGATTAAC-----GCTGAC-AAATCCGTTGAAGGAAA------ 392
|| ||||.| |||..| ||| ||.||||||
BPUM_0255___y 325 GT-------ATTATCTTCTAGCTCTCTAAA-----TGCAGGAAAAGTATC 362
BSNT_00492___ 393 ---------TCTTTTCTTCGTTGTAGATAAAGGCAAGCAATACGAGCTT- 432
|||||||||.|||||.|||||||..||..|.||..|||||
BPUM_0255___y 363 AAAAGGCGGTCTTTTCTTTGTTGTTGATAAAGAAAAAGACTATCAGCTTG 412
BSNT_00492___ 433 --AACTATACGCC-------------GAAATCTTACGGTGATAAAAAACC 467
.||.||..||| .||| |.|.|||.||||.||.
BPUM_0255___y 413 TGTACAATGAGCCAGGTAGTGGTTCTAAAA----AAGATGACAAAACACT 458
BSNT_00492___ 468 AAAATCAGTTACTTTTAAAATTGACGGAAAAGAC------AAAAAAATCC 511
|.|||..|.|| ||||| ||.|||||| ||||||
BPUM_0255___y 459 AGAATTCGATA---TTAAA------GGTAAAGACTTAATGAAAAAA---- 495
BSNT_00492___ 512 TGACGACGGCAGATAAGCTCCAAGATTCTGCAAAAGCGTTATCAGCTTAT 561
|||||||..||.||||..|||||||||||..|.||..|||||
BPUM_0255___y 496 --------GCAGATACACTTCAAGCATCTGCAAAAGCCCTTTCTTCTTAT 537
BSNT_00492___ 562 GTTGATGTCCTTCTTTTCGGCAAAGATAACGCCGATTTCGAAAAAATCAC 611
.||||||||.|..||||.||.||..||||||.|||.|||||||||.|.||
BPUM_0255___y 538 ATTGATGTCATGATTTTTGGTAAGAATAACGACGAGTTCGAAAAACTAAC 587
BSNT_00492___ 612 CGGCGCTAACAA---AAATGAAATTGTAAATGATTTCAATGAATCAGCCA 658
.||.|.|||||| ||.|| |||||||..|.||..||.|||||..||
BPUM_0255___y 588 AGGTGATAACAAATCAACTG---TTGTAAACCAATTTGATAAATCATTCA 634
BSNT_00492___ 659 AAGACGGTTATCTCTCAGCTTCCGGCCTTTC--------CAGCACATATG 700
||.|.||.||..||.|..|.||.||..|||| |||||.|
BPUM_0255___y 635 AACAAGGCTACATCACGTCATCAGGTATTTCTTCTAGCTCAGCAAA---- 680
BSNT_00492___ 701 CGGACAGCAAAGCGCTTGATAATATCGTGAATGGCATTAAAGAGGGATTA 750
|||| |.||| .||||||||..|..|.||.|...|.|||||...|||
BPUM_0255___y 681 -GGAC-GAAAA--CCTTGATAAGCTTCTAAAAGCTGTAAAAGAAACATT- 725
BSNT_00492___ 751 AGC--AAAAACTCTTCCA----TTCAAGCAAAAACGACTTCAATCTCTAA 794
||| ||||| ||.| .|||| |||||||.|...|.|||..|..
BPUM_0255___y 726 AGCTGAAAAA----TCAAAAGTCTCAA-CAAAAACAAAAGCCATCAGTGG 770
BSNT_00492___ 795 AGACGAAGCAATTGT---TGAAGCCACAGTTAAACCTGTAGATGCATCTT 841
.||..||||..|||| ||.| ||..|||.|||..|.||||||
BPUM_0255___y 771 TGATAAAGCTGTTGTGACTGTA---ACTCTTACACCAATTGATGCA---- 813
BSNT_00492___ 842 CTCTTTCAGACCGC------ATCG-----AAGACAAAGTGAAAGACTACT 880
||.|||| |||| ||||.||||.||..||.|.||
BPUM_0255___y 814 -------AGCCCGCTTGTCGATCGTCTAAAAGAGAAAGCGACTGAGTTCT 856
BSNT_00492___ 881 ACAGTAAAAACTCTAGTGCCAGC----TATGAGGAGGCAGTGAAATACGC 926
||||.||||||..| .|||| ||.||.||.||....||||||..
BPUM_0255___y 857 ACAGCAAAAACCGT----TCAGCTTCTTACGATGAAGCTCAAAAATACTT 902
BSNT_00492___ 927 GC-TTCAAGTCTATCCTGAGGAATTCAAAAAGCTTGGACCTGCTTCATCT 975
.| ||||| ||||.||.||.||.||||||||..|.||||||.|.||.|||
BPUM_0255___y 903 ACTTTCAA-TCTACCCAGAAGAGTTCAAAAAATTAGGACCTTCATCTTCT 951
BSNT_00492___ 976 GAAAAAACAGTTGAAGTGAAAATGAAGAAAAATGACATCGACCAATGGCA 1025
|||.|||||||.|||||.||.|||||||||||||||||||||||||||.|
BPUM_0255___y 952 GAAGAAACAGTAGAAGTCAACATGAAGAAAAATGACATCGACCAATGGAA 1001
BSNT_00492___ 1026 GCTTGATATGGATGATTACAGAGCAGCAG--AATTAGTCGAAGCATTCAT 1073
.||||||.||.|.|||||||.|.|| || .||||||.|||...|||||
BPUM_0255___y 1002 ACTTGATTTGAACGATTACAAAACA--AGCTCATTAGTTGAAAAGTTCAT 1049
BSNT_00492___ 1074 CAAAGAA-TAA 1083
| ||||| |||
BPUM_0255___y 1050 C-AAGAACTAA 1059
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