Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00484 and BPUM_0250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00484.1.24716.seq
# -bsequence dna-align/BPUM_0250___yccG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00484-BPUM_0250___yccG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00484-BPUM_0250___yccG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00484
# 2: BPUM_0250___yccG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity: 465/1058 (44.0%)
# Similarity: 465/1058 (44.0%)
# Gaps: 430/1058 (40.6%)
# Score: 1066.0
#
#
#=======================================
BSNT_00484 0 -------------------------------------------------- 0
BPUM_0250___y 1 GTGAACGCTTTCTATCTTGGATTCCGCATATATGCTCTCATATGGCTAGG 50
BSNT_00484 0 -------------------------------------------------- 0
BPUM_0250___y 51 TCTTGCGTTTCATGCAGTAGCTGAAGCTTTTCTGCCTCAATCATCAGGAG 100
BSNT_00484 0 -------------------------------------------------- 0
BPUM_0250___y 101 TGCTGTGGCTCCTCACTTTTTGTGTGATTGGTCTTTATACATGTTTCATA 150
BSNT_00484 1 ------------TTGGCACAGCCGGTA-----TTATGTGTAA-------- 25
|||.|.|| .||| ||| |||||
BPUM_0250___y 151 TACAAAAGGTTTTTGCCTCA---TGTAAGTGGTTA--TGTAATGTTGGGT 195
BSNT_00484 26 ----TCGCGATATTTGCAGGGTGTGAAGGGCT----CCGTATCGGAC--- 64
|.|.|.|.|||.| .||||.|||.|| |..|.||.|||
BPUM_0250___y 196 GCTTTTGTGCTCTTTAC---CTGTGCAGGTCTTTCCCTTTTTCTGACGCA 242
BSNT_00484 65 -------------AG-TCTGCTTTG-------------------CAGGCA 81
|| |||..|||| || |||
BPUM_0250___y 243 AGGAAATGGATGGAGCTCTCTTTTGGTTTTTGTGATCATCATGACA-GCA 291
BSNT_00484 82 ---AGGCTTTC--------TGAT-CAAATTGA--------TAA----GCT 107
|..||||| |||| ||||..|| ||| ||.
BPUM_0250___y 292 GATATCCTTTCATTGAAGATGATGCAAACGGAGAGACGATTAAATGGGCG 341
BSNT_00484 108 GACTCA--AGCTGAACAGCACG------------CCAATCAAATGCTGAT 143
|..||| ||||||.|| ||| |||||.||.||.||.|
BPUM_0250___y 342 GCTTCAAGAGCTGATCA--ACGCAGAATCAAGAACCAATGAATTGTTGCT 389
BSNT_00484 144 TGATGT---CAG-AAGCCGGAATCATGACACAATGAAACATATCACTGCA 189
|||..| ||| ||.| |||||||.|||...|.||||.|.|.|||
BPUM_0250___y 390 TGAGCTGCGCAGTAAAC----ATCATGAAACAGCTAGACATTTAAATGC- 434
BSNT_00484 190 ATCAAATCAGCTCAGCCCAAGGCAGATACACAAGCATATATTCAAAACTG 239
|...||.|| |.|.||.|.|| |||||..|.||||
BPUM_0250___y 435 --CTTTTCCGC---GTCGAACGAAG-------AGCATGAAATCAA----- 467
BSNT_00484 240 GGCGGAT---------CAATACAGCCAATATGACTGTTTTTTGAAAGGAG 280
|||| ||||||..|.||.||..|..||...|||||||||
BPUM_0250___y 468 ---GGATTTGATTCAGCAATACGTCAAACATTTCCCTTGGATGAAAGGAG 514
BSNT_00484 281 AGAACGCGTA----------------CATTGCAGGGGTGCTTTATGATTT 314
|.||.||.|| ||||.| |||
BPUM_0250___y 515 AAAATGCCTATTTGGCCTCAACTCTGCATTCC---------------TTT 549
BSNT_00484 315 TTT--------AGAAAAAGCCCGCGCCTCGAATGTGAGTG---TTTCGCT 353
||| .||||||| |.|..|.|| ||||.||
BPUM_0250___y 550 TTTCAACGGGCTGAAAAAG------------AGGACATTGCCCTTTCTCT 587
BSNT_00484 354 GCATATGCATACACCGCTTTCTTCCCTTCCGTTTTCGCCTGCTGATCAGG 403
..|..|.||..||||..||||.||.|||||.|||||....||.|||||||
BPUM_0250___y 588 AGACCTTCAAGCACCTTTTTCATCGCTTCCTTTTTCTAAGGCGGATCAGG 637
BSNT_00484 404 TCAGCTTGGTCGGCAACATATTAGAAAATGCGCTCGACAGC-GCG----- 447
|.||.||....||.|||.|..|.||.|||||.||.||| || |||
BPUM_0250___y 638 TTAGTTTTACTGGAAACTTGCTTGATAATGCTCTAGAC-GCAGCGATTGA 686
BSNT_00484 448 -GCGGAG---GCCCGAGAAAAA--GCAGAGATTAAACTGGA----GACTT 487
|||.|| |||.|| |||.| |||| .|.||.|| |||.|
BPUM_0250___y 687 AGCGAAGCAAGCCGGA-AAAGAGGGCAG-----CATCTCGATATCGACCT 730
BSNT_00484 488 CACTGCGCAGCGGGCTTTATGTACTGACTTGTGAAAACAGCACTCCCGGG 537
|..|.||.||||||||.|.|.||.|...|||||||||||||||....||.
BPUM_0250___y 731 CTATTCGGAGCGGGCTCTTTTTAATCCATTGTGAAAACAGCACAAAAGGA 780
BSNT_00484 538 ATGGACCCAAAA---GTGCTCGATACAATTTAT---CAATCGTTTGGCCG 581
||||| |||| |||.| |.||.||||.| .||.| |||||.||
BPUM_0250___y 781 ATGGA---AAAACACGTGTT--AGACCATTTGTTCAAAAAC-TTTGGACG 824
BSNT_00484 582 CTCAACGAAAAACGGCGCTCATGAAGGCATGGGCACATATATCATTCAAA 631
|||.||.|||..|||||.||||.||||.|||||.||.|||||||||||..
BPUM_0250___y 825 CTCGACAAAAGGCGGCGATCATCAAGGAATGGGGACGTATATCATTCATC 874
BSNT_00484 632 AAC-TGGTGAAGAGCGCTTTTGGCAG-------GCTGGATTTTACCTACC 673
|.| ||.||||.| ||||| .||.|||||.||.||||
BPUM_0250___y 875 AGCTTGTTGAAAA--------GGCAGACGGTACTCTTGATTTCACTTACC 916
BSNT_00484 674 G----CCACCCCGTCTTCCGGTTAGAAATCAAAATTCC-------GTTTC 712
| ||| |..||.||..|.|..||||||||.|| .|.||
BPUM_0250___y 917 GTTCTCCA----GATTTGCGACTTGTCATCAAAATCCCCCTCACGATGTC 962
BSNT_00484 713 AGAAATAA 720
|.||
BPUM_0250___y 963 ATAA---- 966
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