Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00491 and BPUM_0249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00491___yccK.1.24716.seq
# -bsequence dna-align/BPUM_0249___yccK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00491___yccK-BPUM_0249___yccK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00491___yccK-BPUM_0249___yccK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00491___yccK
# 2: BPUM_0249___yccK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 976
# Identity: 635/976 (65.1%)
# Similarity: 635/976 (65.1%)
# Gaps: 128/976 (13.1%)
# Score: 1986.0
#
#
#=======================================
BSNT_00491___ 1 ATGGATCAAACACGTACACTCGGCAAAACGAAGCTGAAGGTGAAGCGGAT 50
|||||.|.|||
BPUM_0249___y 1 ---------------------------------------GTGAATCCGAT 11
BSNT_00491___ 51 CGGATTCGGCGCGAATGCGGTCGGCGGGCATAATCTATTTCCAAATCTAC 100
.||..|.||..||||||||||.||.||.||||||.|.||.||.||.||..
BPUM_0249___y 12 AGGGCTTGGTACGAATGCGGTGGGTGGACATAATTTGTTCCCGAACCTGA 61
BSNT_00491___ 101 ATGATGAAACAGG--GAAGGATTTAGTGCGCACGGCATTGGATGGCGGCG 148
.|||.||..|.|| || ||..|.|||...||.||..|.|||...||.|
BPUM_0249___y 62 GTGAAGATGCCGGACGA--GAGCTTGTGGAGACAGCTCTTGATCAAGGTG 109
BSNT_00491___ 149 TCAATTTTATCGATACCGCTTTTATATATGGATTGGGGCGATCTGAAGAA 198
|||||||..|.|||.|.||||||||.|||||..||||.||.||.||.|||
BPUM_0249___y 110 TCAATTTCTTAGATTCTGCTTTTATTTATGGGCTGGGCCGTTCAGAGGAA 159
BSNT_00491___ 199 TTAATCGGCGAAGTCGTA----CAGGAACGCGGCG--TGCGGAATGAGCT 242
||.||.||.||..| || || ||.|.|||| .|.|.|| |.||
BPUM_0249___y 160 TTGATTGGTGAGAT--TATTGCCA--AAAGAGGCGGTAGAGAAA--ACCT 203
BSNT_00491___ 243 CATCATCGCCACCAAAGGAGCTCATAAAGAAGTGAACGG-CAGCATTGAA 291
..||.|.||.||.|||||.||||||||||||||.||||| || .||||||
BPUM_0249___y 204 TGTCCTTGCGACAAAAGGGGCTCATAAAGAAGTAAACGGACA-AATTGAA 252
BSNT_00491___ 292 TTAGACAATAGCCGGGAGTTTCTTCGCAGCG-AGGTCGAGAAGAGCCTAA 340
||.||.||.|||||.||.||| ||...||.| |||||||.||.|||||.|
BPUM_0249___y 253 TTGGATAACAGCCGAGACTTT-TTAAGAGAGCAGGTCGAAAATAGCCTGA 301
BSNT_00491___ 341 AGCGGCTGAAAACAGATTACATTGATTTGTATTATGTTCACTTTCCGGA- 389
|.||.||||||||||||||.||||||||.||.|||.|.||.||.|||||
BPUM_0249___y 302 AACGACTGAAAACAGATTATATTGATTTATACTATATGCATTTCCCGGAC 351
BSNT_00491___ 390 -------------TGGAAAAACANTCGCTGAAGTGGCGGGCACTTTGAAA 426
||||| |||||.||.|||||.||.||.
BPUM_0249___y 352 GGCCGGACGCCGCTGGAA-----------GAAGTAGCAGGCACATTAAAG 390
BSNT_00491___ 427 GAGCTGAAGGATGAGGGGAAAATCAAAGCGATCGGCGCTTCGAACCTCGA 476
||..||||||||||.||||||||||..|||||.||.||.||.|||||.||
BPUM_0249___y 391 GAATTGAAGGATGAAGGGAAAATCAGGGCGATTGGTGCATCTAACCTTGA 440
BSNT_00491___ 477 TTATCAGCAATTGCAGGAATTTAATGCTGATGGCTATTTGGAGGT-CTTC 525
||.|.|.||..|.||.|..||||||...||||||||.||.||.|| |||
BPUM_0249___y 441 TTTTGAACAGCTTCAAGCCTTTAATCGAGATGGCTACTTAGATGTGCTT- 489
BSNT_00491___ 526 CAGGCCGAATATTCTCTCATACAGCGTGATGCCGAGAAAGAGCTTCTTCC 575
|||.|.||.||||||.|..|..|.|||||.||.||.||.||.|||||.||
BPUM_0249___y 490 CAGTCGGAGTATTCTTTGCTGAAACGTGAGGCAGAAAAGGATCTTCTCCC 539
BSNT_00491___ 576 ATACTGTGAAAAACAAGGCATCTCCTTTATTCCTTACTTTCCGCTTGCGT 625
||||||.|...|.||..|.||.||||||||||||||.||.|||.|.||||
BPUM_0249___y 540 ATACTGCGTCGAGCATCGTATTTCCTTTATTCCTTATTTCCCGTTGGCGT 589
BSNT_00491___ 626 CCGGACTGCTGACAGGAAAATTCACGCAAGA---CACAGTCTTTGATGAT 672
|.||..||.||||.||.|||||.|||.|.|| .||| |||||||||
BPUM_0249___y 590 CAGGTTTGTTGACTGGTAAATTTACGAAGGATGCGACA---TTTGATGAT 636
BSNT_00491___ 673 -TTC-AG-AAAGGATAAACCTCAATTTCAGGGTGAAACGTTTATCCACAA 719
||| || |||.||| ||.|..||.||.||.||..||||..|.||.||
BPUM_0249___y 637 ATTCGAGCAAAAGAT---CCGCTTTTCCAAGGCGAGGCGTTCCTTCAAAA 683
BSNT_00491___ 720 TCTCAAAAAAGTAGATAAGCTGAAAGCAGTAGCGGA--GGAAAAACAAGC 767
||||.||||||||||.|||||.||.|||.|.||..| ..|||||| ||
BPUM_0249___y 684 TCTCGAAAAAGTAGACAAGCTAAAGGCAATTGCACAATCTAAAAAC--GC 731
BSNT_00491___ 768 GGATACGGCACATGTCGCCTTGGCGTGGCTGTTA--ACGAGACCGGCGAT 815
.||.||||||||.|||||..|.||.|||||.||| || ||..|||| ||
BPUM_0249___y 732 CGAAACGGCACACGTCGCACTCGCTTGGCTTTTAGCAC-AGGACGGC-AT 779
BSNT_00491___ 816 TGATGCCATTATTCCAGGAGCTAAACGACCTGAGCAATTACAGGATAATC 865
||||||||||||||||||.||.||||||.||||||||.|.|||.|.||.|
BPUM_0249___y 780 TGATGCCATTATTCCAGGTGCAAAACGAGCTGAGCAAGTTCAGCAAAACC 829
BSNT_00491___ 866 TGAAAACCTTGAAC---ATTGAACTCACCGAAGACGAAGTGAAT----TT 908
|.||||| .||| .||.||.|.||..||||.|||.|.||| ||
BPUM_0249___y 830 TCAAAAC---AAACGAAGTTCAATTAACAAAAGAGGAAATCAATCAAATT 876
BSNT_00491___ 909 CATCAGCGACATTT----TTAAATAA 930
.| |.|||||| ||.|
BPUM_0249___y 877 GA----CCACATTTTCTCTTGA---- 894
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