Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01429 and BPUM_0242
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_01429___yfhM.1.24716.seq
# -bsequence dna-align/BPUM_0242___yfhM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01429___yfhM-BPUM_0242___yfhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01429___yfhM-BPUM_0242___yfhM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01429___yfhM
# 2: BPUM_0242___yfhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity: 609/898 (67.8%)
# Similarity: 609/898 (67.8%)
# Gaps: 74/898 ( 8.2%)
# Score: 1914.0
#
#
#=======================================
BSNT_01429___ 1 GTGGACGGAGTTAAATGCCAGTTT--GTCAAT----ACGAACGGAATCAC 44
|.||||..||.|| |.||| .||||| ||.|||||..|.||
BPUM_0242___y 1 ----ATGGAGCAAATTG--AATTTCAATCAATCCAAACAAACGGTGTAAC 44
BSNT_01429___ 45 GCTCCACGTTGCAGCCGCAGGACCGGAAGACGGCCCGTTAATTGTCCTGC 94
.||.|||...|||...||.|||||.||.||.||.|||.|..||.|.||||
BPUM_0242___y 45 ACTTCACACAGCAATGGCTGGACCTGAGGATGGACCGCTGCTTATACTGC 94
BSNT_01429___ 95 TCCATGGATTTCCTGAGTTTTGGTACGGCTGGAAAAATCAAATCAAACCG 144
|.||.||||||||||||||.||||||||||||||.||.|||||||..||.
BPUM_0242___y 95 TGCACGGATTTCCTGAGTTCTGGTACGGCTGGAAGAACCAAATCATGCCC 144
BSNT_01429___ 145 CTTGTTGATGCGGGTTACCGGGTCATTGCTCCTGATCAGCGGGGCTACAA 194
||.|..||.||.||.||.||.|||.|.|.|||||||||..||||||||.|
BPUM_0242___y 145 CTGGCCGAGGCAGGCTATCGTGTCGTCGTTCCTGATCAAAGGGGCTACCA 194
BSNT_01429___ 195 TCTCAGTGACAAACCGGAAGGAATTGATTCATATCGGATT-GATACATTA 243
|||.|||||.||.||.||||||||.||.||.|| ||.||| |||..|||.
BPUM_0242___y 195 TCTAAGTGATAAGCCAGAAGGAATCGAGTCCTA-CGTATTAGATCAATTG 243
BSNT_01429___ 244 AGAGATGATATCATCGGGCTTATT---ACGCAATTCACTG---ATGAAAA 287
||||||||||||.|.|||||.||| |||| |.|.|| ||.||||
BPUM_0242___y 244 AGAGATGATATCGTAGGGCTGATTAAGACGC---TTAGTGGGAATCAAAA 290
BSNT_01429___ 288 AGCAATTGTCATCGGTCATGACTGGGGAGGAGCTGTCGCATGGCATTTGG 337
.||.|||||....||||||||.|||||.|||||.||.||.||||||||.|
BPUM_0242___y 291 GGCGATTGTAGGTGGTCATGATTGGGGCGGAGCAGTTGCTTGGCATTTAG 340
BSNT_01429___ 338 CTTCCACACGCCCGGAATATCTTGAAAAACTGATCGCGATCAATATCCCG 387
|.||||||||..|..|||||.|.||.||.||.|||....||||.||.|||
BPUM_0242___y 341 CATCCACACGTTCTCAATATGTAGAGAAGCTCATCATTGTCAACATGCCG 390
BSNT_01429___ 388 CACCCGCACGTCATGAAAACCGTAACGCCGCTTTATCCGCCGCAATGGCT 437
||.||||..||.||||..|..||....|||.|||||||.||.||.|||..
BPUM_0242___y 391 CATCCGCGGGTGATGATGAAGGTTCTTCCGTTTTATCCACCACAGTGGAA 440
BSNT_01429___ 438 GAAAAGCTCGTATATCGCATACTTCCAGCTGCCCGATATACCGGAGGCAT 487
|||||||||.||.||.||.|.|||.|||||.||..||.|.||.||||.|.
BPUM_0242___y 441 GAAAAGCTCCTACATTGCTTTCTTTCAGCTTCCGAATGTGCCAGAGGTAG 490
BSNT_01429___ 488 CACT--AAGGGAAAATGATTATGAAACATTAGACAAAGCGATTGGATTAT 535
|||| || ||||||.|.|.|.|||...|.||..||||.||||||
BPUM_0242___y 491 CACTCCAA--GAAAATCACTTTCAAAAGCTGGATGAAGCCATTGGA---- 534
BSNT_01429___ 536 CCGACCG-----TCCCGCGCTTTTTACATCCG-AGGA-----TGTCAGCA 574
|.|||.| .||| .|||.|.|| || |||| |.||| |
BPUM_0242___y 535 CTGACTGCAAGACCCC---ATTTGTTCA--CGAAGGAAGATGTATCA--A 577
BSNT_01429___ 575 GGTACAAAGAAGCGTGGAAGCAGCCGGGCGCGCTGACAGCTATGCTGAAC 624
|.||.|||...||.||||.||||||.||.||..||||..|.||||||||.
BPUM_0242___y 578 GTTATAAACTGGCTTGGACGCAGCCAGGTGCCATGACCTCAATGCTGAAT 627
BSNT_01429___ 625 TGGTACAGAGCCCTCAGAAAAGGAAGCTTGGCAGAGAAACCCTCTTACGA 674
|||||..|.||..|||.|||.|||.||||.| .|||.||..|..|.|
BPUM_0242___y 628 TGGTATCGTGCGATCAAAAAGGGAGGCTTTG----AAAAGCCGATATCAA 673
BSNT_01429___ 675 AAC-------AGTACCT-TACCGAATGATCTGGGGAATGGAAGACCGCTT 716
|.| ||||||| || ||.|||||||||||.|||||||||...|.
BPUM_0242___y 674 AGCGCATTTTAGTACCTGTA-CGCATGATCTGGGGGATGGAAGACAAGTA 722
BSNT_01429___ 717 TTTGAGCAGAAAGCTTGCGAAAGAGACG--GAAAGGCAT-TGCCCGAATG 763
|||.||.||||||||.|||||.||.||| ||| .|| |||||.||||
BPUM_0242___y 723 TTTAAGTAGAAAGCTAGCGAAGGAAACGATGAA---GATATGCCCTAATG 769
BSNT_01429___ 764 GACATCTCATCTTTGTTGATGAAGCTTCCCATTGGATTAACCACGAAAAG 813
|.||.||.||.|||||.|||||.|||||.||||||||.||.||.||||||
BPUM_0242___y 770 GTCAACTGATTTTTGTCGATGATGCTTCACATTGGATCAATCATGAAAAG 819
BSNT_01429___ 814 CCAGCCATCGTCAATCAGCTGATTTTGGAATATCTTAAGAACCAATAA 861
||||...|.||.||..|.||.||..|.|||| ||..||||.||
BPUM_0242___y 820 CCAGAAGTAGTAAACAAACTCATCCTCGAAT---TTTTGAACTAA--- 861
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