Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01429 and BPUM_0242

See Amino acid alignment / Visit BSNT_01429 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_01429___yfhM.1.24716.seq
#    -bsequence dna-align/BPUM_0242___yfhM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01429___yfhM-BPUM_0242___yfhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01429___yfhM-BPUM_0242___yfhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01429___yfhM
# 2: BPUM_0242___yfhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity:     609/898 (67.8%)
# Similarity:   609/898 (67.8%)
# Gaps:          74/898 ( 8.2%)
# Score: 1914.0
# 
#
#=======================================

BSNT_01429___      1 GTGGACGGAGTTAAATGCCAGTTT--GTCAAT----ACGAACGGAATCAC     44
                         |.||||..||.||  |.|||  .|||||    ||.|||||..|.||
BPUM_0242___y      1 ----ATGGAGCAAATTG--AATTTCAATCAATCCAAACAAACGGTGTAAC     44

BSNT_01429___     45 GCTCCACGTTGCAGCCGCAGGACCGGAAGACGGCCCGTTAATTGTCCTGC     94
                     .||.|||...|||...||.|||||.||.||.||.|||.|..||.|.||||
BPUM_0242___y     45 ACTTCACACAGCAATGGCTGGACCTGAGGATGGACCGCTGCTTATACTGC     94

BSNT_01429___     95 TCCATGGATTTCCTGAGTTTTGGTACGGCTGGAAAAATCAAATCAAACCG    144
                     |.||.||||||||||||||.||||||||||||||.||.|||||||..||.
BPUM_0242___y     95 TGCACGGATTTCCTGAGTTCTGGTACGGCTGGAAGAACCAAATCATGCCC    144

BSNT_01429___    145 CTTGTTGATGCGGGTTACCGGGTCATTGCTCCTGATCAGCGGGGCTACAA    194
                     ||.|..||.||.||.||.||.|||.|.|.|||||||||..||||||||.|
BPUM_0242___y    145 CTGGCCGAGGCAGGCTATCGTGTCGTCGTTCCTGATCAAAGGGGCTACCA    194

BSNT_01429___    195 TCTCAGTGACAAACCGGAAGGAATTGATTCATATCGGATT-GATACATTA    243
                     |||.|||||.||.||.||||||||.||.||.|| ||.||| |||..|||.
BPUM_0242___y    195 TCTAAGTGATAAGCCAGAAGGAATCGAGTCCTA-CGTATTAGATCAATTG    243

BSNT_01429___    244 AGAGATGATATCATCGGGCTTATT---ACGCAATTCACTG---ATGAAAA    287
                     ||||||||||||.|.|||||.|||   ||||   |.|.||   ||.||||
BPUM_0242___y    244 AGAGATGATATCGTAGGGCTGATTAAGACGC---TTAGTGGGAATCAAAA    290

BSNT_01429___    288 AGCAATTGTCATCGGTCATGACTGGGGAGGAGCTGTCGCATGGCATTTGG    337
                     .||.|||||....||||||||.|||||.|||||.||.||.||||||||.|
BPUM_0242___y    291 GGCGATTGTAGGTGGTCATGATTGGGGCGGAGCAGTTGCTTGGCATTTAG    340

BSNT_01429___    338 CTTCCACACGCCCGGAATATCTTGAAAAACTGATCGCGATCAATATCCCG    387
                     |.||||||||..|..|||||.|.||.||.||.|||....||||.||.|||
BPUM_0242___y    341 CATCCACACGTTCTCAATATGTAGAGAAGCTCATCATTGTCAACATGCCG    390

BSNT_01429___    388 CACCCGCACGTCATGAAAACCGTAACGCCGCTTTATCCGCCGCAATGGCT    437
                     ||.||||..||.||||..|..||....|||.|||||||.||.||.|||..
BPUM_0242___y    391 CATCCGCGGGTGATGATGAAGGTTCTTCCGTTTTATCCACCACAGTGGAA    440

BSNT_01429___    438 GAAAAGCTCGTATATCGCATACTTCCAGCTGCCCGATATACCGGAGGCAT    487
                     |||||||||.||.||.||.|.|||.|||||.||..||.|.||.||||.|.
BPUM_0242___y    441 GAAAAGCTCCTACATTGCTTTCTTTCAGCTTCCGAATGTGCCAGAGGTAG    490

BSNT_01429___    488 CACT--AAGGGAAAATGATTATGAAACATTAGACAAAGCGATTGGATTAT    535
                     ||||  ||  ||||||.|.|.|.|||...|.||..||||.||||||    
BPUM_0242___y    491 CACTCCAA--GAAAATCACTTTCAAAAGCTGGATGAAGCCATTGGA----    534

BSNT_01429___    536 CCGACCG-----TCCCGCGCTTTTTACATCCG-AGGA-----TGTCAGCA    574
                     |.|||.|     .|||   .|||.|.||  || ||||     |.|||  |
BPUM_0242___y    535 CTGACTGCAAGACCCC---ATTTGTTCA--CGAAGGAAGATGTATCA--A    577

BSNT_01429___    575 GGTACAAAGAAGCGTGGAAGCAGCCGGGCGCGCTGACAGCTATGCTGAAC    624
                     |.||.|||...||.||||.||||||.||.||..||||..|.||||||||.
BPUM_0242___y    578 GTTATAAACTGGCTTGGACGCAGCCAGGTGCCATGACCTCAATGCTGAAT    627

BSNT_01429___    625 TGGTACAGAGCCCTCAGAAAAGGAAGCTTGGCAGAGAAACCCTCTTACGA    674
                     |||||..|.||..|||.|||.|||.||||.|    .|||.||..|..|.|
BPUM_0242___y    628 TGGTATCGTGCGATCAAAAAGGGAGGCTTTG----AAAAGCCGATATCAA    673

BSNT_01429___    675 AAC-------AGTACCT-TACCGAATGATCTGGGGAATGGAAGACCGCTT    716
                     |.|       ||||||| || ||.|||||||||||.|||||||||...|.
BPUM_0242___y    674 AGCGCATTTTAGTACCTGTA-CGCATGATCTGGGGGATGGAAGACAAGTA    722

BSNT_01429___    717 TTTGAGCAGAAAGCTTGCGAAAGAGACG--GAAAGGCAT-TGCCCGAATG    763
                     |||.||.||||||||.|||||.||.|||  |||   .|| |||||.||||
BPUM_0242___y    723 TTTAAGTAGAAAGCTAGCGAAGGAAACGATGAA---GATATGCCCTAATG    769

BSNT_01429___    764 GACATCTCATCTTTGTTGATGAAGCTTCCCATTGGATTAACCACGAAAAG    813
                     |.||.||.||.|||||.|||||.|||||.||||||||.||.||.||||||
BPUM_0242___y    770 GTCAACTGATTTTTGTCGATGATGCTTCACATTGGATCAATCATGAAAAG    819

BSNT_01429___    814 CCAGCCATCGTCAATCAGCTGATTTTGGAATATCTTAAGAACCAATAA    861
                     ||||...|.||.||..|.||.||..|.||||   ||..||||.||   
BPUM_0242___y    820 CCAGAAGTAGTAAACAAACTCATCCTCGAAT---TTTTGAACTAA---    861


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