Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06132 and BPUM_0235
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06132___yxaF.1.24716.seq
# -bsequence dna-align/BPUM_0235___yxaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06132___yxaF-BPUM_0235___yxaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06132___yxaF-BPUM_0235___yxaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06132___yxaF
# 2: BPUM_0235___yxaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 673
# Identity: 355/673 (52.7%)
# Similarity: 355/673 (52.7%)
# Gaps: 206/673 (30.6%)
# Score: 808.0
#
#
#=======================================
BSNT_06132___ 1 ATGACTAGCAGAGGAGATTCACG--TGAAAAAATCCTTCACACGGCGTCA 48
|.||.| ||| .||.|.|||..||||.|||||..||
BPUM_0235___y 1 -------------GTGAGT-ACGAAGGATAGAATTATTCAAACGGCCGCA 36
BSNT_06132___ 49 CGTCTGTTCCAGCTGCAA----GGATATCACGCGACAGGTTTGAACCAGA 94
|.|||.||.| |||| ||.|||||.||||||||.|||||.||.|
BPUM_0235___y 37 CTTCTTTTGC----GCAAACAGGGGTATCATGCGACAGGATTGAATCAAA 82
BSNT_06132___ 95 TTGTAAAAGAAAGCGGTGCTCCTAAGGGATCGCTTTATCACTTTTTTCCG 144
|..|.|.|||.|||||..|.|||||.|||||.||||||.|.|.||||||.
BPUM_0235___y 83 TCATTAGAGAGAGCGGCACGCCTAAAGGATCTCTTTATTATTATTTTCCA 132
BSNT_06132___ 145 AATGGCAAAGAAGAATTAGCAATTGAAGCGGTTACATAT--------ACA 186
||.||.||||||||..||||.||.|.|||.|||..|||| |.|
BPUM_0235___y 133 AACGGAAAAGAAGAGCTAGCCATAGCAGCCGTTGAATATATTAGTCAAAA 182
BSNT_06132___ 187 GGTAA--GATCG--TTGAACATCTGATACAGCAAAGCAT---------GG 223
|||.| .|||| ||||| .|||||.| ||
BPUM_0235___y 183 GGTCATCAATCGAATTGAA------------GAAAGCTTTGCCTATTCGG 220
BSNT_06132___ 224 ATGAATCCTCTGATC-CAACAGAAGCGATTCAGCTTTTTATCA-AAAAAA 271
|.| ||| ||.||| | ||.||..||..||||||.| |||.|.
BPUM_0235___y 221 ACG-ATC--CTTATCTC-------GCCATCGAGTGTTTTATGACAAACAT 260
BSNT_06132___ 272 CAGCC-AGCCAATTT---------GATAACACAGAAAGCATTAAAGGTAT 311
||.|| || .|||| ||.|| .||||| |||.||
BPUM_0235___y 261 CATCCGAG--GATTTACGGAGCAGGAAAA---TGAAAG------AGGGAT 299
BSNT_06132___ 312 TCCAGTCGGTTTGCTGGCGAGTGAGACAGCGTTAATC--AG--TGAAC-- 355
|||..|.|..||.||||| |.||| |||| || .||||
BPUM_0235___y 300 TCCGATTGTCTTACTGGC------GGCAG----AATCCAAGCCAGAACAT 339
BSNT_06132___ 356 -CGCTGCGGACGGTT-----TGCATGAAGGTGTTTAAA------------ 387
|||.|| || |||||| ||||
BPUM_0235___y 340 ACGCAGC------TTCATACTGCATG--------TAAACAAGAGATGATC 375
BSNT_06132___ 388 AGCTGG--GAAGCGGTTTTTGCCAGAAAA-TTAATGGAAAACGGATTTGC 434
.||||| .|||| ||.||..|||||| .|.|||.|.|.|||||.||.
BPUM_0235___y 376 CGCTGGCAAAAGC---TTGTGAAAGAAAAGCTCATGAACAGCGGATATGA 422
BSNT_06132___ 435 AGATGAAGAAGCAAATCAGCTTGG-AACGCTGATTAATTC---GATGATT 480
|||..|..||||..||.|| |||| ..|.||..||.|||| |.|||||
BPUM_0235___y 423 AGAAAACAAAGCGGATGAG-TTGGCTTCTCTCCTTCATTCAATGGTGATT 471
BSNT_06132___ 481 GAGGGCGGCATCATGCTTTCGTTAAC-----GAATAAAGACAAAACGCCT 525
|.||| .||.|||.|.|| .|.|.|| || |||||.|
BPUM_0235___y 472 GGGGG---------TCTATCGATGACCACAGCACTCAA-AC-AAACGAC- 509
BSNT_06132___ 526 CTTCTTCTCATTGCCGAAC-----AAA---TACC--AG-----------T 554
|.|.|| .|||| ||| |||| || |
BPUM_0235___y 510 ------CCCGTT--AGAACATGTGAAATGTTACCTTAGACACTTATTTAT 551
BSNT_06132___ 555 GC-TGGTGAGAAAAAAAGGGTAG 576
|| .|.||||.||
BPUM_0235___y 552 GCGAGATGAGTAA---------- 564
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