Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05872 and BPUM_0233
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_05872___epr.1.24716.seq
# -bsequence dna-align/BPUM_0233___epr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05872___epr-BPUM_0233___epr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05872___epr-BPUM_0233___epr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05872___epr
# 2: BPUM_0233___epr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2256
# Identity: 1099/2256 (48.7%)
# Similarity: 1099/2256 (48.7%)
# Gaps: 822/2256 (36.4%)
# Score: 2730.5
#
#
#=======================================
BSNT_05872___ 1 ------------------ATGAAAAA---------------CATG----- 12
.||||||| ||||
BPUM_0233___e 1 ATGCAAGGGGCTATCGCCTTGAAAAAGAAAATCGTCGTAGTCATGGCGTT 50
BSNT_05872___ 13 ---TCTTGCAAACTTGTTGTATCAGTCACTCTGTTTTTCAGTTTTCTCAC 59
|||||| ||| |||| .|||.|||.| ||.||
BPUM_0233___e 51 TCTTCTTGC------GTT------GTCA-ACTGCTTTGC------CTTAC 81
BSNT_05872___ 60 CATAGGCCCTCTCGCTCATGCGCAAAACAGCAGCG-----AGAA--AGAG 102
||| ||| ||.|| |.|.|||.|| |||| |||.
BPUM_0233___e 82 CAT--------TCG--CAGGC----AGCTGCACCGCCAAAAGAAACAGAT 117
BSNT_05872___ 103 GTTATTGTGGTTTATAAAAA-CAAGGCCGGAAAGGAAACCATCCTG---- 147
||.||..|.||.|||||||| ||| ||||||||.||..|.|
BPUM_0233___e 118 GTCATCATCGTCTATAAAAACCAA------AAAGGAAAACAAACAGCTAT 161
BSNT_05872___ 148 ----GACAGTGATGCTGATGTTGAACAG--CAGTATAAACATCTTCCCGC 191
||.||||| .|.|.||||| | |||||.|.||||||||||||
BPUM_0233___e 162 TGAAGAAAGTGA----AAAGGTGAAC-GCACAGTACATACATCTTCCCGC 206
BSNT_05872___ 192 GGTAGCGGTCACAGCAG----ACCAGGAGACA-GTAAAAGAATTAAAGCA 236
.||.||.||.||||||| ||.||..|.|| || .|.|.||.||
BPUM_0233___e 207 TGTCGCTGTGACAGCAGATGAACAAGCGGTCACGT-----CACTCAAACA 251
BSNT_05872___ 237 GGATCCTGATATTTTGTATGTAGAAAACAACGTA---------------T 271
.||.||..|.||...||||||...|||.|||.|| |
BPUM_0233___e 252 AGACCCCAACATCGCGTATGTCTCAAAAAACATAAAGGTCAAACTCGCTT 301
BSNT_05872___ 272 CATTTAC--CGCAGCAGACAGCACGGATTTCAAAGTGC-------TGTCA 312
|.|.||| .|.||||.||.|| ||| .||||
BPUM_0233___e 302 CTTCTACGATGAAGCAAACCGC-------------TGCCGCTACTGGTCA 338
BSNT_05872___ 313 GA------CGG--CACTGACACCTCTGACAA-CTTTGAGCAATGGAACCT 353
|| .|| || ||| .|||.|||| || |||| ||.|
BPUM_0233___e 339 GAATTTTTTGGTTCA---ACA-ATCTTACAATCT----GCAA---AAGC- 376
BSNT_05872___ 354 TGAGCCCATTCAGGTGAAACAGGCTTGGAAGGCAGGACTGACAGGAAAGA 403
||| |.||.||.||.||....||.|.|||..|||||||.||.|
BPUM_0233___e 377 TGA--------ATGTAAAGCAAGCGATAAAAGAAGGCGTGACAGGGAAAA 418
BSNT_05872___ 404 ATATCAAAATTGCCGTCATTGACAGCGGGATCTCCCCCCACGATGACCT- 452
||.|.|||.|||||.|..|.||.|..||.||.||.||.||.||.||.||
BPUM_0233___e 419 ATGTGAAAGTTGCCATTTTAGATACTGGCATTTCTCCACATGAGGATCTA 468
BSNT_05872___ 453 ---GTCGATTGCCGGCGGGTATTCAGCTGTCAGTTATACCTCTTCTTACA 499
|| || |||||||..|.|||..|||.|..||.||..||||.||.|
BPUM_0233___e 469 AAGGT--AT--CCGGCGGTAAATCATTTGTGAAGTACACAACTTCCTATA 514
BSNT_05872___ 500 AAGATGATAACGGCCACGGAACACATGTCGCAGGAATTATCGGAGCCAAG 549
||||||||.|.||.||.||.||||||||||||||.|..|||||.|| |
BPUM_0233___e 515 AAGATGATCAAGGGCATGGTACACATGTCGCAGGTACAATCGGTGC---G 561
BSNT_05872___ 550 C---ATAACGGCTACGGAATTGACGGCATCGCACCGGAAGCACAAA--TA 594
| ||||||..|||||.|..|.||||.||||..|.| ||.|.|| |.
BPUM_0233___e 562 CTCAATAACGATTACGGCACAGTCGGCGTCGCTTCTG--GCGCGAAGCTG 609
BSNT_05872___ 595 TACGCGGTTAAAGCGCTTGATCAGAACGGCTCGGGGGATCTT-CAAAGTC 643
||.||.||.||||.|.|.|||.|.||.||....||.|| ||| .|.||.|
BPUM_0233___e 610 TATGCTGTAAAAGTGTTAGATAAAAAGGGAGAAGGCGA-CTTGTACAGCC 658
BSNT_05872___ 644 TTCTCCAAGGAATTGACTGGTCGA-TCGCAAACGGGATGGACATCGTCAA 692
|.||.|.||||||.||.|||.|.| |.|| |||..||||||.||..|.||
BPUM_0233___e 659 TGCTTCGAGGAATCGATTGGGCCATTAGC-AACAAGATGGATATTATGAA 707
BSNT_05872___ 693 TATGAGCCTTGG----CACGACGTCAGACAGCAAAATCC----------T 728
|.|.||.||.|| .|.|| |||.|||| |
BPUM_0233___e 708 TTTAAGTCTAGGTTTTGAAGA----------CAATATCCCTATTTTGCGT 747
BSNT_05872___ 729 TCATGACGCCGTGAACAAAGCATATGAACAAGGTGTTCTGCTT---GTTG 775
||| ||.|||.|..|||||||..||.|||| .|||||| ||.|
BPUM_0233___e 748 TCA----GCAGTGGATGAAGCATACAAAAAAGG---ACTGCTTGTGGTCG 790
BSNT_05872___ 776 CCGCAAGCGGTAACGACGGAAACGGCAAGCCAGTGAAT---------TAT 816
|.||||||||.||.||.||.|| .|| |||| ||.
BPUM_0233___e 791 CTGCAAGCGGGAATGATGGGAA---GAA------GAATTTTATTAGCTAC 831
BSNT_05872___ 817 CCGGCGGCATACAGCAGTGTCGTTGCGGTTTCAGCAACAAACGAAAAGAA 866
||.||.||.||||..||||||.||||.|||||.|||||.||.||||||.|
BPUM_0233___e 832 CCTGCCGCTTACAATAGTGTCATTGCCGTTTCTGCAACGAATGAAAAGGA 881
BSNT_05872___ 867 TCAGCTTGCCTCCTTCTCAACAACTGGAGATGAAG---TTGAATTTTCAG 913
|.||||.|..||..||||||..||.|| || ||| ||||||||||.|
BPUM_0233___e 882 TAAGCTCGTTTCTCTCTCAAATACAGG-GA--AAGGCATTGAATTTTCTG 928
BSNT_05872___ 914 CACC-GGGGACAAACATCACAAGCACTTACTTA---AACCAGTAT---TA 956
|.|| ||.||.||| .|||..||||||||.||| ||..|.||| ||
BPUM_0233___e 929 CCCCAGGAGAGAAA-GTCATTAGCACTTATTTAAAGAATGAATATTGGTA 977
BSNT_05872___ 957 TGCAACGGGAAGCGGAACATCCCAAGCGACACCGCACGCCGCTGCCATGT 1006
|||||| .||.|||||.|||||..||||.||.|.|.|.|.||||.
BPUM_0233___e 978 TGCAAC------AGGTACATCGCAAGCTGCACCTCATGTCACAGGCATGC 1021
BSNT_05872___ 1007 TTGCCTTGTTAAAACAGCGTGATCCTGCCG-AGACAAACGTCCAGCTTCG 1055
|.||..||||.|||||||.|.|||| |..| |.|||||.||.||||||||
BPUM_0233___e 1022 TGGCACTGTTGAAACAGCTTCATCC-GAAGAAAACAAATGTACAGCTTCG 1070
BSNT_05872___ 1056 CGAGGA----AATGCGGAGAAATATCGTTGATCTTGGTACCGC---AGGC 1098
| | |.||||.||..|||..||.|||||||| ||| |||.
BPUM_0233___e 1071 C----ACTTTATTGCGCAGCTATACAGTGGATCTTGG---CGCAAAAGGA 1113
BSNT_05872___ 1099 CGCGATCAGCAATTTGGCTACGGCTTAATCCAATATAAAGCACAGGCAAC 1148
...||||..|||||.|||||.|||....|.|||||||...|.|||
BPUM_0233___e 1114 AAGGATCCACAATTCGGCTATGGCCGCGTGCAATATATTCCCCAG----- 1158
BSNT_05872___ 1149 AGATTC-AGCGT-------AC-GCGGC-AGCAGAGCAAGCGGTGAAAAAA 1188
|| |||.| || |||.| ||| ||.||.||||.|
BPUM_0233___e 1159 ----TCTAGCTTTTTGAAGACTGCGACTAGC-------GCTGTCAAAACA 1197
BSNT_05872___ 1189 GCGGAACAAAC-----AAAAGCA--CAAACCGATATCAA------CAAAG 1225
||.| |||| ||||||| || |||.|||| ||||.
BPUM_0233___e 1198 GCCG---AAACGTCTAAAAAGCAGGCA----GATGTCAATCAAGCCAAAA 1240
BSNT_05872___ 1226 CGCAAGAACTCGTCAGCCAGCTGCCGGGCTCCGACGCCAAAACTGCCCTG 1275
|| ||||.|.| |||||.| |||||
BPUM_0233___e 1241 CG--AGAATTGG------------------CCGACTC----ACTGC---- 1262
BSNT_05872___ 1276 CAAAAAAGACTGGATAAAGTACAGTCATACAGAAATGTAAAAGATGCGAA 1325
|||||
BPUM_0233___e 1263 ----------------AAGTA----------------------------- 1267
BSNT_05872___ 1326 AGACAAAGTCGCAAATGCAGAAAAATATAAAACACAGCAAACCGTTGATA 1375
|.|||| |.|
BPUM_0233___e 1268 -----------------------------------AACAAA------AAA 1276
BSNT_05872___ 1376 CAGCACAAACCGCCATCAACAAGCTGCCAAACGG----AACAGACAAAAA 1421
||||||..|||| ||||| ||.||..|.||.
BPUM_0233___e 1277 CAGCACTCACCG-----------------AACGGGTGAAAAAGGTACAAG 1309
BSNT_05872___ 1422 GAACCTGCAAAAACGCTTAGACCAAGTAAAA--CGCTACATCGCGTCAAA 1469
||||| |.|.|.| ||||.|
BPUM_0233___e 1310 GAACC-------------------ATTGATATCCGCTCC----------- 1329
BSNT_05872___ 1470 GCAAGCGAAAGACAAAGTTGCGAA-AGCGGAAAAAAGCAAAAAGAAAACA 1518
|||.|.| |||||.|.|.|| |||.|||||||||||||
BPUM_0233___e 1330 GCACGTG-----CAAAGGTTCAAACAGCCGAAAAAAGCAAAA-------- 1366
BSNT_05872___ 1519 GATGTGGACAGCGCACAATCAGCAATTGGCAAGCTGCCTGCAAGTTCAGA 1568
|||||...||.|||
BPUM_0233___e 1367 -------------CACAAGGTGCCATT----------------------- 1380
BSNT_05872___ 1569 AAAAACGTCCCTGCAGAAACGCCTTAACAAAGTGAAGAGCACCAATTTGA 1618
||||.||.|| |||||.||
BPUM_0233___e 1381 AAAAGCGCCC------AAACGGCT-------------------------- 1398
BSNT_05872___ 1619 AGACGGCACAGCAATCCGTATCTGCGGCTGAAAAGAAATCAACTGATGCA 1668
||||
BPUM_0233___e 1399 -------------------------------------ATCA--------- 1402
BSNT_05872___ 1669 AATGCGGCAAAAGCACAATCAGCCGTCAATCAGCTTCAAGCAGGCAAGGA 1718
||||||..|| ||| ||||||.||
BPUM_0233___e 1403 --------AAAAGCTAAA------------------CAA--AGGCAAAGA 1424
BSNT_05872___ 1719 CAAAAC-AGCATTGCAAAAACGGTTAGACAAAGTGAAGAAAAAGGTGGCG 1767
.||||| ||| .|||||||.|||.|.||||||||.||.|||.||.||||
BPUM_0233___e 1425 AAAAACAAGC-CTGCAAAACCGGCTCGACAAAGTTAAAAAACAGTTGGC- 1472
BSNT_05872___ 1768 GCGGCTGAAGCAAAA-AAAGTGGAAAC---TGCCAAGGCAAAA-GTGAAG 1812
|| |.||||| ||||| ||| .||||| .||||| |||||.
BPUM_0233___e 1473 ----CT--ATCAAAAGAAAGT---AACAGACGCCAA-ACAAAAGGTGAAA 1512
BSNT_05872___ 1813 AAAGCGGAAAAAGACAA---AACAAAGAAATCAAAGGCATCCGCTCAGTC 1859
||||| |.|||.||| ||||||||||.||||.|||.|.||.||..|
BPUM_0233___e 1513 AAAGC---AGAAGCCAAACGAACAAAGAAAACAAAAGCAGCAGCGCAAAC 1559
BSNT_05872___ 1860 TGCAGTGAATCAATTAAAAGCATCCAATGAA--AAAACAAAGCTGCAAAA 1907
.||.|||||.||..|||||||.||.|| || |||||||...|.|||||
BPUM_0233___e 1560 CGCTGTGAAACAGCTAAAAGCTTCTAA--AACGAAAACAAGTTTACAAAA 1607
BSNT_05872___ 1908 ACGGCTGAACGCCGTCAAACCGAA--AA---GTAACCAAAAACCTTTAAG 1952
|||..|| |||||.| || ||||
BPUM_0233___e 1608 ACGATTG----------AACCGGATTAAGGTGTAA--------------- 1632
BSNT_05872___ 1953 ACTTGCATTCCAGGTCTTAAAGGTTTTTTACATTCTAAGAACATCACACA 2002
BPUM_0233___e 1632 -------------------------------------------------- 1632
BSNT_05872___ 2003 CAACCTTTTTCCCATCCATTGTACAGGCTTTTCATACTATTGCTATACAG 2052
BPUM_0233___e 1632 -------------------------------------------------- 1632
BSNT_05872___ 2053 CCATGA 2058
BPUM_0233___e 1632 ------ 1632
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