Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00981 and BPUM_0229
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00981___ydgK.1.24716.seq
# -bsequence dna-align/BPUM_0229___tcaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00981___ydgK-BPUM_0229___tcaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00981___ydgK-BPUM_0229___tcaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00981___ydgK
# 2: BPUM_0229___tcaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1426
# Identity: 739/1426 (51.8%)
# Similarity: 739/1426 (51.8%)
# Gaps: 425/1426 (29.8%)
# Score: 1530.5
#
#
#=======================================
BSNT_00981___ 1 ----------------ATGCTGCACAATCCAACTGGAAAAGAACGCTTGG 34
||.|...|.|||| |||||.||
BPUM_0229___t 1 ATGAGTTCTTTATCTTATCCCCAAGAATC------GAAAAAAA------- 37
BSNT_00981___ 35 CACTAGCG-TTTCTGCT---CGGTATGCTTG---CTATA-------TTGG 70
|.|| |||||.|| ||...|||||| ||.|| ||
BPUM_0229___t 38 ----ACCGATTTCTCCTTGCCGCATTGCTTGGTTCTTTAACAGCCCTT-- 81
BSNT_00981___ 71 GC-CCGCTTAATATAGATATGTATTTGCCAAGTTTTCCTGAAATCGCGGA 119
|| ||||||...||.|||||||||||.||....||.|||.|.||.|||..
BPUM_0229___t 82 GCACCGCTTGCAATGGATATGTATTTACCTGCATTGCCTCATATTGCGCG 131
BSNT_00981___ 120 AGATTTATCAGCAAG---TGCTTCACTTGT-TCAGTTAAGTTTAACAGCC 165
.|||||...|||||| |||| |||| .||.||||||.|.|..||.
BPUM_0229___t 132 CGATTTTGAAGCAAGCACTGCT----TTGTCCCAATTAAGTCTGATGGCT 177
BSNT_00981___ 166 TGTCTGGTCGGACTTACGATCGGCCAGCTGATTGTCGGGCCGGTCAGCGA 215
|||||..|.|||||..||.|.||.||.|||||||..||.||..|.||.||
BPUM_0229___t 178 TGTCTTATTGGACTGGCGCTTGGACAACTGATTGCAGGCCCTATTAGTGA 227
BSNT_00981___ 216 TGCGCAGGGAAGACGAAAACCGCTATTAATCTG--TATT--TTTTTATTT 261
|.||...||.|||.||||.|||||..|.|||.| ||.| |||||||
BPUM_0229___t 228 TACGGTCGGCAGAAGAAAGCCGCTGATGATCGGCTTAATCATTTTTAT-- 275
BSNT_00981___ 262 GCGTTATCTTCTCTGTTTTGTGCACTG---TCGCCCAATATAACAACTTT 308
||.| .|.|||||.||.|||.||.|| |||.|.|.|
BPUM_0229___t 276 -CGCT-GCATCTCTTTTATGTACAGTGGTTTCGTCGATT----------- 312
BSNT_00981___ 309 AGTGGCTGCGCGTT-----TTTTA---------CAAGGCTTCACTGCTTC 344
|||.| ||| |.||| |||||..||.|||.|||
BPUM_0229___t 313 --TGGAT----GTTCATCCTCTTAAGACTGATTCAAGGACTCGCTGGTTC 356
BSNT_00981___ 345 TGCAGGGCTTGTGCTGTCTCGCGCAATCGTCCGCGATGTGTTTACCGGAA 394
.|||||..||||..|..|.||.||.||.||.||.|||...|.| |||
BPUM_0229___t 357 AGCAGGCATTGTCATTGCACGAGCCATTGTGCGTGATCATTAT----GAA 402
BSNT_00981___ 395 G----AGAGCTTTCTAAATTTTTCTCGCTGTTAATGGTCATTACCGCGGT 440
| |||..|..|.|||||.||..|.|||.|.|||.|..|.|.||.|||
BPUM_0229___t 403 GGATCAGAAATGACGAAATTCTTTGCACTGCTCATGTTGGTCAACGGGGT 452
BSNT_00981___ 441 GGCGCCAATG--GTTGCGCCTAT--------GACAGGCGGTGCCATTTT- 479
.||.|| || |..||.||||| ||||| ||.||
BPUM_0229___t 453 TGCTCC--TGCAGCGGCACCTATTGTGGGCGGACAG--------ATGTTA 492
BSNT_00981___ 480 -GCTTTTGCCGTTCGCAACGTGGCA-------TACAATTTTTCACGTCCT 521
||||| .|.||.||||| | ||.|||
BPUM_0229___t 493 CGCTTT--------ACCACATGGCAGGGTGTGT----TTGTTC------- 523
BSNT_00981___ 522 CATGATCATCGGATTTTTACTAGTTCTTC-------TGAT--TGCATTGA 562
|||||..|.||| || |||| ||| |||
BPUM_0229___t 524 --------------TTTTAGGAATTC-TCGGAACCTTGATGCTGC--TGA 556
BSNT_00981___ 563 GGT------------TAAAAGAAACGCTTCC-------GC-CGGAAAAAC 592
|.| |..|||||| ||||.| || |.||.|.||
BPUM_0229___t 557 GATCCATTTTTTCACTTCAAGAAA-GCTTACCTGCGGAGCGCAGACAGAC 605
BSNT_00981___ 593 ----GGATTCCAAGCTCA-ATCGGAACATCCGTCAAAACGATGGGCAGCC 637
||.||.||| || ||.|.||...||.|.||||...| |||
BPUM_0229___t 606 AGGAGGCTTTCAA---CAGATTGTAAGTGCCATGAAAATTTT----AGC- 647
BSNT_00981___ 638 TGCTGAAGGATCGATC-CTTTATGGGGTACGCGTTAACTGTCGGA----- 681
||..||||| || ||||.|.|||||.|| .||.|||.|
BPUM_0229___t 648 ----GAGTGATCG-TCTCTTTGTTGGGTATGC----CCTCTCGCAAGGTC 688
BSNT_00981___ 682 -TTTATTCACGGGGGAAGC----TTTGCATATGTGTCTGGTACGCCTTTT 726
|.||||| |.||| |||||.|||.|.|||||..|.||.|||
BPUM_0229___t 689 TTGTATTC------GCAGCGATGTTTGCTTATATTTCTGGCTCACCGTTT 732
BSNT_00981___ 727 GTATACCAGGA-----------TATCTACGGGGTGTCGCCGCAGGTATTT 765
||....||||| ||||| ||.||.|.|||.
BPUM_0229___t 733 GTGCTTCAGGAACTTTTTCACCTATCT-----------CCACAAGGATTC 771
BSNT_00981___ 766 AGTATT--CTTTTTGGCATTAACGGGCTGGCGATTAT-ATCGGGCAGC-- 810
|||..| ||||..|| |.|||.|.||.|.|||.|| | ||||
BPUM_0229___t 772 AGTGCTGCCTTTGCGG--TGAACAGTCTTGGGATCATCA-----CAGCTG 814
BSNT_00981___ 811 --------TTTATCATCGGACGCTTTGGCGGAATCATTCATGAA-AAAAG 851
|||..|| .||.|||| |||.|| |||...||| |.|||
BPUM_0229___t 815 GACAAGAATTTGCCA-GGGTCGCT---GCGAAA--ATTGGCGAAGAGAAG 858
BSNT_00981___ 852 CCTGCTTCGTATAGCGGTCATTACGGCTATGATTGCGAC----GGCTGTG 897
.|.|||||.||.| .|||.| ||||.||.|| |||.|.|
BPUM_0229___t 859 -GTTCTTCGCATTG----GATTGC-----TGATAGCTACTTTAGGCGGCG 898
BSNT_00981___ 898 CTATTAACC---------ATGA---CCA-TGATTCACGGTCCTCTTGCTA 934
|.||| |||| ||| ||||.||.|||..|.|.||
BPUM_0229___t 899 ----TCACCTTATTTTTGATGATCTCCATTGATGCAGGGTTGTATGGC-- 942
BSNT_00981___ 935 CATTAGTCATA-TCCATTTTCATTTACATGATTACGA---TCGGCATGGT 980
|.||.|| ||| ..||.|||.|.||.|..|.| |.||.||.||
BPUM_0229___t 943 ----ATTCTTATTCC--GCTCTTTTTCGTGGTCTCAAGCGTTGGAATTGT 986
BSNT_00981___ 981 -------TCTGACCAGCACGTTTACCCTGGCCATGGAAAAGCA-GGGGCA 1022
||||.|| ||| |.||.||.|||.|..|.|| ||.|||
BPUM_0229___t 987 TGGCACCTCTGCCC----CGT---CTCTTGCGATGCAGCATCACGGCGCA 1029
BSNT_00981___ 1023 CCGCGCCGGAAGTGCAAGTGCGCTGCTTGGG----------ATGCTCCCG 1062
|..||.|||||||||...||.|| |.|.|| ||||| |
BPUM_0229___t 1030 -CATGCAGGAAGTGCAGCCGCACT-CATCGGTGTGGCACAAATGCT---G 1074
BSNT_00981___ 1063 CT--GCTCCTTGGTTCAATCGTGTCACCGCTTGTAGGCATTAATG----- 1105
|| ||.||| .||||.||||.|||||.|| |||| |
BPUM_0229___t 1075 CTAGGCGCCT--------GCGTGACACCTCTTGTCGG-ATTA--GCCGGA 1113
BSNT_00981___ 1106 AGAC-AACAGCCGTTCCGATGGGAGCC-----ATCATG-TTTGT-AAC-- 1145
||.| |||||||.||||.|||| ||| ||.||| ||||| |||
BPUM_0229___t 1114 AGCCAAACAGCCTTTCCAATGG--GCCTGATTATTATGCTTTGTGAACTA 1161
BSNT_00981___ 1146 ---------AGCTGTCATCGGCTCACTGGCGTTTTTTGGATT---AACGA 1183
.|||||.|| .|| ||.||||.|.| |.|||
BPUM_0229___t 1162 GGTGCACTTTGCTGTTAT---TTC-------TTCTTTGTAGTTCGAGCGA 1201
BSNT_00981___ 1184 AAGAACGAGTAGGGCAGAATTCATAA 1209
||.||.||...| |||||
BPUM_0229___t 1202 AAAAAAGACCCG---------CATAA 1218
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