Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00427 and BPUM_0224
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00427___mmuM.1.24716.seq
# -bsequence dna-align/BPUM_0224___mmuM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00427___mmuM-BPUM_0224___mmuM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00427___mmuM-BPUM_0224___mmuM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00427___mmuM
# 2: BPUM_0224___mmuM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1030
# Identity: 628/1030 (61.0%)
# Similarity: 628/1030 (61.0%)
# Gaps: 173/1030 (16.8%)
# Score: 1721.0
#
#
#=======================================
BSNT_00427___ 1 ATGAATCCTATCCAACACATATTAGATACATACCCGC--TTATTGTGCTA 48
|||||||||||.|||..|...|||.|..|..||.|.| |||.|.| ||
BPUM_0224___m 1 ATGAATCCTATTCAAAGCCGTTTACAGGCTCACGCACCTTTAATTT--TA 48
BSNT_00427___ 49 GACGGCGCCATGGCGACCGAGCTTGAACGCAAGGGCTGTAATTTGAATGA 98
|||||.||..|.||.||.|||||||||||.||||||||.|||||.|||||
BPUM_0224___m 49 GACGGTGCACTTGCAACAGAGCTTGAACGAAAGGGCTGCAATTTAAATGA 98
BSNT_00427___ 99 CAGTCTGTGGTCGGCAAAAATCCTGATGGAAGAGCCA-AATCTGATTAAA 147
||||.|.|||||.||.|||||.|||||.|||.||||| ||| |||||.|.
BPUM_0224___m 99 CAGTTTATGGTCAGCCAAAATACTGATTGAACAGCCAGAAT-TGATTCAG 147
BSNT_00427___ 148 CAAGTACATACT--GATTATTTCGCGGCAGGCGCCGATTGTGCAATCACT 195
||||||| ||| |||||.|||...||.||.||.||.|||||.|..||.
BPUM_0224___m 148 CAAGTAC--ACTTGGATTACTTCCAAGCCGGAGCTGACTGTGCCACAACA 195
BSNT_00427___ 196 GCCAGCTATCAGTCTACATTTGAAGGCTTTGCCGCACGCGGGCTGA---- 241
||.||.||.||..|.||..||||.||||| .|||||
BPUM_0224___m 196 GCGAGTTACCAAACGACGATTGATGGCTT-----------CGCTGAAAAA 234
BSNT_00427___ 242 -GC------GAAGCGGAAGCACGCCGGCTCAT-------------CGAGT 271
|| .|||..||||| ||| |||
BPUM_0224___m 235 GGCTATTCAAAAGAAGAAGC---------CATTGAACTAATGAAACGA-- 273
BSNT_00427___ 272 TGTCCGTCAGCATCGCAGCTGAAGCACGTGATGAATTTTGGTCGCTTGAA 321
|||||||...|.|||...||.|||||.|||...||||||..|..||||
BPUM_0224___m 274 --TCCGTCACTTTAGCAAAAGAGGCACGCGATCTTTTTTGGCAGGATGAA 321
BSNT_00427___ 322 GAGAACCGTTTGAAT---CGGCCAAAACCGATCATT----GCGGCTTCTG 364
|..|..||| ||| |||.|||||| |||| ||.|..||||
BPUM_0224___m 322 GCCAGTCGT---AATGGGCGGACAAAAC----CATTTGTCGCAGGATCTG 364
BSNT_00427___ 365 TAGGCCCTTATGGCGCTTATCTTGCAGACGGGTCTGAGTATCGCGGCAAC 414
||||.||.|..|||||||||.|..|.||.||.||.||.|||...||.||.
BPUM_0224___m 365 TAGGGCCATTCGGCGCTTATTTATCTGATGGTTCAGAATATAAAGGAAAT 414
BSNT_00427___ 415 TACGCAATATCAGAAGATGAACTGATTGAATTTCATCGCCCCCGGATGAA 464
||||.|.|..||||..|.|.|||.|||||.||||||.|.||..||||..|
BPUM_0224___m 415 TACGGACTCACAGAGCAGGCACTCATTGATTTTCATAGACCAAGGATTCA 464
BSNT_00427___ 465 GGCGCTGATT----GAAGCCGGAGCTGATGTATTGGCATGCGAAACGATT 510
||| ||| |||||.||.||.|||.|..|.||.||.|||||||||
BPUM_0224___m 465 GGC----ATTAGTAGAAGCAGGTGCAGATATTCTTGCGTGTGAAACGATT 510
BSNT_00427___ 511 CCGTGTCTGACTGAAGCCAAAGCGATTGTTCG----GCTGTTG-AAG--G 553
||.||.||.|.||||||.|.|||.| ||| |||.||| ||| |
BPUM_0224___m 511 CCTTGCCTCATTGAAGCAATAGCCA----TCGCAAAGCTATTGCAAGATG 556
BSNT_00427___ 554 AATTTCCTGAAACG-----TATGCATGGATCAGCTTCAGTGCTAAAGACG 598
|||| .|.|| |.|||.|||||.|..|||||.||.||.||||
BPUM_0224___m 557 AATT-----CAGCGGTGTATCTGCTTGGATTACATTCAGCGCGAAGGACG 601
BSNT_00427___ 599 GCCTGCATATCAGTGACGGAACACCTG--CAGCTGACTGCGCATCA---- 642
..||.|||||.|||||.|| |.|..|| ||| .||.||.|.| ||
BPUM_0224___m 602 ATCTTCATATTAGTGAAGG-AGATTTGCTCAG-AGAATGTGTA-CAAGCA 648
BSNT_00427___ 643 -TGG---CTTGATGAACACCGCCAAATTGCAGCACTCGGCATCAACTGCA 688
||| ||| ||||| ||.||.||.||..|||||.|.|||||.|
BPUM_0224___m 649 CTGGAACCTT-ATGAA------CAGATCGCTGCTGTCGGCGTTAACTGTA 691
BSNT_00427___ 689 CGCCGCTTCAGCATATCCCTTCCTTGATAGAGGAGTTAAAAAA--GAACA 736
||||||..||..|||||.||||..|.||..|.|||.|.||||| |.|||
BPUM_0224___m 692 CGCCGCCGCAATATATCTCTTCTCTCATTCAAGAGATGAAAAAGGGGACA 741
BSNT_00427___ 737 CGTCAAAACCGATCATTGTCTACCCGAATTCAGGTGAGCAATATGATCCG 786
.| .||.|||||..|.||.||.||.||.||.||.||...|||||||||.
BPUM_0224___m 742 AG--CAAGCCGATTGTCGTATATCCAAACTCTGGGGAATTATATGATCCT 789
BSNT_00427___ 787 GAA-ACAAAAACATGGA--------ACGGCGCAGCATGCGCAGAATCTTA 827
||| || ||...||||| |||.|.|||||| |.|.||
BPUM_0224___m 790 GAAGAC-AAGGTATGGAGCGGGGATACGCCTCAGCAT----ACATTC--- 831
BSNT_00427___ 828 CGGGGCGAGCGCCCGCACC--TGGCATGAAAAAGGAGCGAGGCTGATTGG 875
||.||..|..||||.| |||.||.||.|.||.|||....|.||.||
BPUM_0224___m 832 ---GGTGAATGTGCGCATCAATGGTATCAAGACGGCGCGCATATCATCGG 878
BSNT_00427___ 876 GGGCTGCTGTCGGACAAAACCCGAAAATATTCA-AGAAATTGCGGCTTGG 924
.||||||||.|||||.|..||.|||.||| ||| .||.||
BPUM_0224___m 879 CGGCTGCTGCCGGACGACGCCAGAAGATA-TCACGGACAT---------- 917
BSNT_00427___ 925 GCCCGCTCTTTAAAA---ACAACTTGA--- 948
.|||||| ||.||.|.|
BPUM_0224___m 918 --------CTTAAAACTTACCACATCATAA 939
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