Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00325 and BPUM_0202
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:15
# Commandline: needle
# -asequence dna-align/BSNT_00325___ybbK.1.24716.seq
# -bsequence dna-align/BPUM_0202.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00325___ybbK-BPUM_0202.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00325___ybbK-BPUM_0202.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00325___ybbK
# 2: BPUM_0202
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 526
# Identity: 290/526 (55.1%)
# Similarity: 290/526 (55.1%)
# Gaps: 134/526 (25.5%)
# Score: 644.0
#
#
#=======================================
BSNT_00325___ 1 ATGATTCTAGTCAGTTCCTGCCTTGGAGGCATTGAA--TGCAGATATAAC 48
.|||||.|.|||||..|.||.||||..|| |||||| |.| |.|||||.
BPUM_0202 1 GTGATTGTGGTCAGCGCTTGTCTTGCTGG-ATTGAAAGTTC-GGTATAAT 48
BSNT_00325___ 49 GGCTCTCACGCAG-CGTCGGAGAAAATCAGAAAACTCGTCGATGA----- 92
| |||| |.|| ||..|.|||||..|| |.||.||
BPUM_0202 49 G--------GCAGCCATC-GATTAGATCAGCGAA----TTGAAGAGTTTG 85
BSNT_00325___ 93 ------AAAGAAA-GCAGTTATGGCTTGCCCTGAACTTCTCGGCGGCTTC 135
||.|||| ||.||.|..|.|||.||||||||.||.|||||||||
BPUM_0202 86 TGCAGGAAGGAAAGGCTGTGACAGTTTGTCCTGAACTGCTAGGCGGCTTC 135
BSNT_00325___ 136 TCTACCCCACGCGAACCCGCAGAAATCATAGGAGGCACCGGCGAGGATGT 185
|||||.||..|...|||.|||||.|||||.||.||....||..|.|||||
BPUM_0202 136 TCTACGCCTAGACCACCGGCAGAGATCATTGGCGGAGATGGACATGATGT 185
BSNT_00325___ 186 CCTCAAT-----GGAACAG-----------CGAAAATCGTGACAGCTTCA 219
| ||.|||| ||| || ||||
BPUM_0202 186 ------TTTGCGGGGACAGGCTACTGTTGTCGA------TG-----TTCA 218
BSNT_00325___ 220 GGAGAA--GACGTCACAGAACTATATATGGAAGGCGC--------CGCGA 259
.| ||| ||.||||||||..|.|||.|..||||.|| |||..
BPUM_0202 219 TG-GAACTGATGTCACAGAGATGTATGTAAAAGGTGCAAAAGCCACGCTG 267
BSNT_00325___ 260 AAACATTGGCTTACGCA-------AAAGAAATCAACGCTTCTGCCGTCAT 302
.|||| |.|| || ||||.|| ||.||.||.|||
BPUM_0202 268 GAACA---GGTT---CAGTCTCTGAAAGCAA-CAGCGGTTGTGC------ 304
BSNT_00325___ 303 ATTAAAAGAAAACAGTCCATCTTGCGGAAGCGGTTTTATCTATAACGGCA 352
|||||||..|.||.||.||.|||||.|||.|..|.||.|||.| ||.|
BPUM_0202 305 --TAAAAGAGTATAGCCCTTCATGCGGGAGCCGGATGATTTATCA-GGGA 351
BSNT_00325___ 353 CA-TTCTCTGGCAA-AAAAATCACCGGCAG-CGGAGTAACCGCCGCACTG 399
.| ||...|||.|| |.||| |.|||.|| .||.||.||..||||..||
BPUM_0202 352 GAGTTTAATGGGAAGACAAA--AGCGGGAGATGGTGTGACGTCCGCTTTG 399
BSNT_00325___ 400 TTAAAACAAG--CGGGCTACCGCGTCA-----TTTCGGAAAACGA----- 437
.|.|||| || ||||.| ||| |.||.|||.|.||
BPUM_0202 400 CTGAAAC-AGCACGGGAT------TCAAGTGTTCTCTGAAGAGGATGATT 442
BSNT_00325___ 438 -GCTTAACGACATATTGT---AA--- 456
|.|| .|| |||| ||
BPUM_0202 443 GGATT-TCG-----TTGTTTCAATAG 462
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