Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01784 and BPUM_0200

See Amino acid alignment / Visit BSNT_01784 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_01784___yhjH.1.24716.seq
#    -bsequence dna-align/BPUM_0200.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01784___yhjH-BPUM_0200.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01784___yhjH-BPUM_0200.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01784___yhjH
# 2: BPUM_0200
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 617
# Identity:     280/617 (45.4%)
# Similarity:   280/617 (45.4%)
# Gaps:         247/617 (40.0%)
# Score: 445.0
# 
#
#=======================================

BSNT_01784___      1 ATGAACAC---AGATCATACAAAACGCAATCTTTTTGAATTGTATGCG--     45
                     |||.|.||   |||.||.|               |||.|||..|.|||  
BPUM_0200          1 ATGGAGACTAAAGAGCAGA---------------TTGTATTAAAAGCGAT     35

BSNT_01784___     46 ----GA---GCTCATTCATCAGCAGGAGAAATGGGAGGGGCTTATTAAAG     88
                         ||   |.|.||||||    ||| ||||.|.||.||..|.||..|| 
BPUM_0200         36 TCAAGATCTGATAATTCAT----AGG-GAAAAGAGAAGGAATGATCCAA-     79

BSNT_01784___     89 C-------CTTTTTATCTGACGAATTGA-----GGAAGCTGGATGTAGA-    125
                     |       ||..|||.|  ||| |.|||     ..||||..||| |.|| 
BPUM_0200         80 CAGATCCACTGATTACC--ACG-ACTGATACACTCAAGCAAGAT-TGGAC    125

BSNT_01784___    126 --GCACGGGAGTAAATCT---CAATTGA-CGATGACAGAAATTCATGTTC    169
                       .|||      |.|.||   ||.||.| |||||      |||||.| .|
BPUM_0200        126 ACTCAC------ACAGCTACACATTTTATCGATG------ATTCAAG-CC    162

BSNT_01784___    170 TATCTTGTGTCGGGGAC-AATGAACCAATTAATGTCACGTCGATAGCAGA    218
                     .|||            | ||.|||.|||.||||   ||.|...|..|..|
BPUM_0200        163 AATC------------CAAACGAATCAAATAAT---ACATTTCTTTCTCA    197

BSNT_01784___    219 AAAAATGAATACGACAAAAGCGACTG-TATCAC----GCATCAGCACAA-    262
                     |.||.|||| ||.|..|||||  ||| |||.||    || |..|.|.|| 
BPUM_0200        198 ACAACTGAA-ACTATCAAAGC--CTGCTATTACAAAGGC-TGTGAAAAAA    243

BSNT_01784___    263 --AATTGCTCGGCGCAGGCTTCCTTCACAGAAC-ACAGCTCAGCGATA--    307
                       |||||.|....|||.|.|         |.|| |..|| ||.||..|  
BPUM_0200        244 CTAATTGATAAAGGCATGGT---------GGACTATTGC-CACCGGCAAG    283

BSNT_01784___    308 ---ATAAAAAGGAGGTCTAC--TTCCGATTGACGCCTGCTGGAAAAA---    349
                        ||||.|||..|||||||  |||  ||||||       .||||||   
BPUM_0200        284 GGGATAAGAAGTCGGTCTACTATTC--ATTGAC-------AGAAAAAGGC    324

BSNT_01784___    350 --------AGCTGCACAGTTTGCACAAAT--ATTATCATCAGAAGGCTGA    389
                             .||.||||.|..||     ||  |||| |||.||||.|||| 
BPUM_0200        325 ACGCAATTGGCGGCACTGCATG-----ATGAATTA-CATGAGAAAGCTG-    367

BSNT_01784___    390 ACAGCGT-----------TTTCTGTCA----TTTTTTGACCGCTA-----    419
                      ..||||           ||||| .||    |||..|||     |     
BPUM_0200        368 -TCGCGTCCTACTTAGAATTTCT-CCAGCAGTTTCATGA-----AGATGA    410

BSNT_01784___    420 --TACCGAGGAAGAGATT-----CTTTTTGCGGAACGGCTGTTTCGGGAT    462
                       |||     |||..|||     ||||||    ||.|||           
BPUM_0200        411 ATTAC-----AAGTCATTGAGCGCTTTTT----AAAGGC-----------    440

BSNT_01784___    463 CTGGTGACAAAATGGTATCCGTCGTCAGAAGAAATTGA-AGGGGGGCTTC    511
                                ||||.|         ||||.||||  | ||         
BPUM_0200        441 -----------ATGGAA---------AGAAAAAAT--ATAG---------    459

BSNT_01784___    512 CTAGCATTTTTAAATAA    528
                                      
BPUM_0200        459 -----------------    459


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