Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00376 and BPUM_0181

See Amino acid alignment / Visit BSNT_00376 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:16
# Commandline: needle
#    -asequence dna-align/BSNT_00376___glpQ.1.24716.seq
#    -bsequence dna-align/BPUM_0181.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00376___glpQ-BPUM_0181.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00376___glpQ-BPUM_0181.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00376___glpQ
# 2: BPUM_0181
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     608/912 (66.7%)
# Similarity:   608/912 (66.7%)
# Gaps:          60/912 ( 6.6%)
# Score: 1787.0
# 
#
#=======================================

BSNT_00376___      1 ATGAGAAAAAATAGAATACTGGC---CTTGTTTGT-TCTGTCGCTGGGCT     46
                     ||||..||||.||||.||||.||   |.||||..| |||.|.|||    |
BPUM_0181          1 ATGAAGAAAAGTAGATTACTTGCTTTCGTGTTGCTCTCTTTTGCT----T     46

BSNT_00376___     47 TACTCTCATTTAT------GGTAAC-GCCA--GTGTCGGCAGCGTCAAAA     87
                     ||||.||   |||      |||..| ||||  ||.|||||       |.|
BPUM_0181         47 TACTGTC---TATTGCGTGGGTGCCGGCCACCGTATCGGC-------ACA     86

BSNT_00376___     88 GGAA-ACCTGCTGTCACCTGACCGTATCCTGACCGTCGCGCACAGAGGGG    136
                     .||| |.||..|.||.||.||.|||||.||.|||||.||.||..|.||.|
BPUM_0181         87 TGAACATCTTTTATCTCCAGATCGTATTCTAACCGTTGCACATCGCGGAG    136

BSNT_00376___    137 CTTCTGGATATGTGCCTGAGCACACGATTCTG---TCTTACGAAAC-CGC    182
                     |.||.||.||||..||.|||||.||   .|||   |||||| |||| |||
BPUM_0181        137 CATCAGGGTATGCACCAGAGCATAC---CCTGGCTTCTTAC-AAACTCGC    182

BSNT_00376___    183 T-CAGAAAATGAAAGCTGATTATATTGAATTGGATCTGCAAATGACAAAA    231
                     | || ||.|||||.||.|||||..|.|||.|.||.||.|||||||||||.
BPUM_0181        183 TACA-AAGATGAATGCCGATTACCTCGAACTCGACCTTCAAATGACAAAG    231

BSNT_00376___    232 GACGGAAAATTGATTGTCATGCATGACGAAAAACTGGACCGCACCACAAA    281
                     ||.||..|..|.||.||||||||.||.||||...|.||||||||||||||
BPUM_0181        232 GATGGCCATCTCATCGTCATGCACGATGAAACCGTTGACCGCACCACAAA    281

BSNT_00376___    282 CGGAATGGGTTGGGTGAAAGACCATACGCTCGCAGACATTAAGAAGCTTG    331
                     .||||.|||.|.|||.|||||||..||.||.||.||.||.||..|.||.|
BPUM_0181        282 TGGAACGGGCTCGGTCAAAGACCTCACACTTGCTGAAATCAAACAACTGG    331

BSNT_00376___    332 ACGCCGGTTCTTGGTTTAATGAAGCCTATCCGGAAAAAGCAAA--GCCGC    379
                     |.||.|||.||||||||||.||||||.||||.||.|.| ||||  ||| .
BPUM_0181        332 ATGCTGGTACTTGGTTTAACGAAGCCAATCCCGACAGA-CAAAATGCC-A    379

BSNT_00376___    380 AGTACGTCGGCCTTAAAGTTCCT-ACATTAGAAGAGGTATTAGACCGTTT    428
                     |.||..||||.|....|| |||| ||||||||.||.|||.|...|..|||
BPUM_0181        380 ACTATATCGGACAGCGAG-TCCTCACATTAGATGAAGTACTGCGCTATTT    428

BSNT_00376___    429 CGGAAAGCACGCG--AACTACTACATTGAAACAAAATCGCCTGACACCTA    476
                     .||.||  |||.|  ||.||.||.||||||||||||...||.||||.|||
BPUM_0181        429 TGGCAA--ACGAGAAAATTATTATATTGAAACAAAAAAACCAGACATCTA    476

BSNT_00376___    477 CCCAGGTATGGAAGAAAAACTGATCGCTTCTTTGCAGAAACATAAATTAC    526
                     .|||...|||||||||||.||..|.||..|..|..|.||||||.|..|.|
BPUM_0181        477 TCCACAAATGGAAGAAAAGCTATTGGCGACCCTAAAAAAACATCATCTTC    526

BSNT_00376___    527 TGGGGAAGCATTCTAAGCCAGGCCAGGTGATCATTCAATCGTTCAGCAAA    576
                     |.|||||.||..|.||...|||.|||||.|||||||||||.||.|||.||
BPUM_0181        527 TCGGGAAACACACAAAAAAAGGGCAGGTCATCATTCAATCCTTTAGCCAA    576

BSNT_00376___    577 GAAAGCCTGGTAAAAGTCCATCAATTACAGCCAAACCTGCCGACCGTTCA    626
                     ||.||||||.||||..|.||..|||||...||...|||.||.|..||.||
BPUM_0181        577 GACAGCCTGCTAAAGCTACAGAAATTAGCTCCGCGCCTTCCAAAAGTACA    626

BSNT_00376___    627 ATTGCTGGAAGCCAAA---CAAATGGCGTCAATGACAGATGCTGCCCTGG    673
                     |   ||...||.||.|   ||||||.||||.||.|||||||.|...||.|
BPUM_0181        627 A---CTTTTAGACAGAACCCAAATGACGTCCATCACAGATGATCAGCTCG    673

BSNT_00376___    674 AAGAAATCAAAACATACGCTGTCGGTGCGGGCCCGGATTATAAAGCTTTA    723
                     |....||||||.|.||.||.||.||.|..||.|||.|||.||.|||.||.
BPUM_0181        674 ACTTCATCAAATCTTATGCAGTGGGGGTCGGACCGAATTTTAGAGCATTG    723

BSNT_00376___    724 AATCAAGAAAACGTCCGTATGATCCGCAGCCACGGCCTCCTGCTTCATCC    773
                     |..|..||||||||.|....|.||.|.||||||||.|||||.||.||.||
BPUM_0181        724 ACACTTGAAAACGTGCAACAGGTCAGAAGCCACGGACTCCTCCTCCACCC    773

BSNT_00376___    774 TTACACAGTCAATAATGAAGCTGATATGCATCGCCTGCTTGATTGGGGCG    823
                     .||.||.|||||.||.|||||.||.|||...||.||.||..|.|..||||
BPUM_0181        774 ATATACGGTCAACAACGAAGCAGACATGACCCGTCTACTGCAATACGGCG    823

BSNT_00376___    824 TAACAGGAGTGTTCACCAACTATCCTGATCTTTTCCACAAAGTAAAAAAG    873
                     |.||.||..|.||||||||||.|||.|||.|.|||.||...||||||   
BPUM_0181        824 TCACCGGTCTTTTCACCAACTTTCCAGATGTCTTCAACCGCGTAAAA---    870

BSNT_00376___    874 GGTTAT---TAA    882
                     |.||.|   |||
BPUM_0181        871 GCTTCTATCTAA    882


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00376 and BPUM_0181

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
