Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05913 and BPUM_0170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05913___yxlG.1.24716.seq
# -bsequence dna-align/BPUM_0170.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05913___yxlG-BPUM_0170.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05913___yxlG-BPUM_0170.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05913___yxlG
# 2: BPUM_0170
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity: 444/980 (45.3%)
# Similarity: 444/980 (45.3%)
# Gaps: 418/980 (42.7%)
# Score: 745.0
#
#
#=======================================
BSNT_05913___ 1 ATGAAGGTGATGATGGCGCTATTGCAGAAGGAGTGGCT--GGAAG----- 43
.|||||||| |||.|.|||||.| | ||.||
BPUM_0170 1 ------ATGATGATG------TTGAAAAAGGAAT---TTAGGGAGTTATT 35
BSNT_05913___ 44 -----GATGGAAAAGCGGCAAGCTGATTTGGCTGCCGA------TTGCGA 82
|.|..||| |.|.|| |||| |.||.| ||.|||
BPUM_0170 36 CACTAGTTATAAA------ATGTTG-TTTG--TACCAATCATTTTTACGA 76
BSNT_05913___ 83 ---TGATGATCGTCGGGCTGACACAGCC---------------GCTGACC 114
|.|||||| |||||.|| |||| ||
BPUM_0170 77 TTTTAATGATC---------ACACAACCTATTACACTCAAAATGCTG-CC 116
BSNT_05913___ 115 A----TTTATTATATGCCGGAAATCATCGCACATGGAGGGAACCTT-CCT 159
| ||| ||.| ||||||| ||..|| || |||
BPUM_0170 117 AGATCTTT------TGTC-GAAATCA--GCTAAT----------TTACCT 147
BSNT_05913___ 160 GACGGCATGAAAAT---CAGTTT---TACGATGCCCTCCGGGTCTGAAGT 203
||.|| || ||.||| |||.|...||| |||
BPUM_0170 148 GAAGG-------ATCTACATTTTATATACCAGAGCCT----------AGT 180
BSNT_05913___ 204 GATGGTCAGCACGCTTT--------------CTCAATTCAACACGCTTGG 239
|..||..|| ||||| .|.||||..|..||||.||
BPUM_0170 181 GCAGGAGAG---GCTTTAGCAAGTGCATTGAGTAAATTTGATTCGCTAGG 227
BSNT_05913___ 240 CATGGCT---CTGGTCATCTTTAGCGTGATGGGCAGTGTAGCCAATGAAA 286
|.||..| |||.|.||..|| ||||||||.| |.|.||...
BPUM_0170 228 CGTGTTTATCCTGATTATGATT---GTGATGGGGA------CGATTGCTG 268
BSNT_05913___ 287 GAAA-------TCAAGGGGTAACAGCGCTGATTATGTCGCGGCCTGTGAC 329
||.| || .|||||.||.|||.|||||||| ||||
BPUM_0170 269 GAGAGCGTGCCTC-TGGGGTGACGGCGATGATTATG---------GTGA- 307
BSNT_05913___ 330 GGCAGCCCATTATATCG--TGAGTAA--ATGGCTCATCCAAAGCGTGATC 375
|.||.||.| .||| |||||.| |||.|||| |||...|| |
BPUM_0170 308 ---AACCAATCA-GTCGAATGAGTTATTATGTCTCA---AAAATATG--C 348
BSNT_05913___ 376 GGCATTATG-----------TCGTTTGCAGCTGGATA-----CGGGCTTG 409
|.| |||| |.|||| ||.|.|||| .|.|||||
BPUM_0170 349 GCC--TATGCCTGTTTAACCTTGTTT--AGTTTGATAGTGGCAGTGCTTG 394
BSNT_05913___ 410 CTTAC---TATT------ACGTCC------GGC-TGCTGTTTGAGG---- 439
|||.| |||| ||.||| ||| ||..|.|||.||
BPUM_0170 395 CTTCCGTTTATTATGTGGACATCCAATTTGGGCATGTGGATTGGGGCGAT 444
BSNT_05913___ 440 ------------ACGC------ATCATTCAGCCGCTTTGCCGCAAGCCTT 471
|||| ||.|| .|||.||
BPUM_0170 445 GTGTTAAAAGGAACGCTTTTGTATTAT--------------CCAAACC-- 478
BSNT_05913___ 472 GGCCTTTAC-GCGCTTTG-GGTGAT-----ATTTATTGTGACCGCCGGCC 514
||| ||.|.||| |||| | ||||.| |.|.||.||..|
BPUM_0170 479 ------TACTGCTCATTGTGGTG-TCGACCATTTGT--TCATCGGCGTTC 519
BSNT_05913___ 515 TTGCCGGAAGTACGATATTCCGGTCTGTCGGAGCAGCTGCGGCTTGCGG- 563
|| ||.| ||.||.|| || |||||| ||||
BPUM_0170 520 TT--------TAAG------CGTTCAGT--GA----CTGCGG---GCGGC 546
BSNT_05913___ 564 -----------GATCGGGCTCA-CAGCAG----CCGTTTCCTTTGTTGTT 597
||||...|||| | |.| ||| ||||||.|||.|.
BPUM_0170 547 GTTTCCCTGTTGATCAATCTCATC--CTGTTTACCG-TTCCTTCGTTTTA 593
BSNT_05913___ 598 T-------CATTA------TTT---CCAGATGGTGCG----AAGTGGCTT 627
| ||||| ||| ||..|.| ||| |||||
BPUM_0170 594 TGAGGACACATTAGGGAAGTTTGCACCTAAAG--GCGTCACAAGTG---- 637
BSNT_05913___ 628 CCGGCTGAGATTTGCAAGCAGGCGGAGCAT-ATCCTTCTTCATGGAGAGC 676
||||||| |||| || | |||||.|||
BPUM_0170 638 -CGGCTGA---------------GGAG-ATGA------TTCATAGAG--- 661
BSNT_05913___ 677 GGGCAGATTTTTTCGGATGGTCACTCACTTTCTCCATTCTGTACATCATG 726
.||.||.|||||| |||.||.|| || ||.|
BPUM_0170 662 ----GGACTTATTCGGA-------TCAGTTGCT--------TA---CAAG 689
BSNT_05913___ 727 C-TTCTGGCCGTGT---------------TTTCTGTGTGGCGCTTCCGGC 760
| ||||.| |||| ||||| |.|..|.|.|..|..
BPUM_0170 690 CGTTCTAG--GTGTATTAGTATTGATTGGTTTCT-TTTTTCTCATTGGAT 736
BSNT_05913___ 761 GGT----------ATGA-AAGCTATTAA-- 777
||| |.|| ||| .||||.
BPUM_0170 737 GGTTTTTTTTTAGAAGACAAG-AATTATAG 765
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