Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00343 and BPUM_0161
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:15
# Commandline: needle
# -asequence dna-align/BSNT_00343___ybbM.1.24716.seq
# -bsequence dna-align/BPUM_0161___ybbM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00343___ybbM-BPUM_0161___ybbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00343___ybbM-BPUM_0161___ybbM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00343___ybbM
# 2: BPUM_0161___ybbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 643
# Identity: 457/643 (71.1%)
# Similarity: 457/643 (71.1%)
# Gaps: 32/643 ( 5.0%)
# Score: 1548.5
#
#
#=======================================
BSNT_00343___ 1 ATGAGCTGTCCTGAACAAATTGTGCAGCTTATGCATATGCATCTTGATGG 50
||||||||||..|||.||||.||.|.||||||||||..|.||.|.||.||
BPUM_0161___y 1 ATGAGCTGTCAGGAAAAAATCGTCCTGCTTATGCATCAGTATTTAGACGG 50
BSNT_00343___ 51 AGATAT----CCTTCCAAAAGATGAACACGTATTAAATGAA--CATCTGG 94
.||.|| || || ||||.|||.|.|.|||||| || ||.|||.
BPUM_0161___y 51 GGACATTGAGCC--CC--AAGACGAAAAAGAATTAAA--AAGCCACCTGC 94
BSNT_00343___ 95 AGACATGCGAGAAATGCAGAAAGCATTTTTACGAGATGGAGAAATCCATA 144
|..|.||.|||.|.|||.|.|..||||||.|..|.||.|||||||||||.
BPUM_0161___y 95 AATCGTGTGAGGAGTGCTGTACTCATTTTCAACAAATTGAGAAATCCATC 144
BSNT_00343___ 145 GCGCTTGTACGGAGCACATCGCATGTCGAAGCCCCCGCGGATTTTACCGC 194
||||||||.|.|||.|||||.|||.|.|||||.||..|.|||||.||.||
BPUM_0161___y 145 GCGCTTGTGCAGAGTACATCTCATATAGAAGCACCAACTGATTTCACTGC 194
BSNT_00343___ 195 TAATGTCATGGCAAAATTGCCTAAGGAGAAGAAAAGAGCTTCTG----TA 240
.||.||.||||||....|.||.||||| ||||.|||.|.|| |.
BPUM_0161___y 195 AAAGGTGATGGCAGGTCTTCCAAAGGA----AAAAAAGCGTGTGTCGATT 240
BSNT_00343___ 241 AAAAGATGGTTCAGAACCCATCCCGTTATCGCAGCTGCTGCGGTATTCAT 290
.||||||||.|||.|.|.|||||..|.||.|..||.|||||..|.||..|
BPUM_0161___y 241 CAAAGATGGATCAAAGCTCATCCGCTGATGGTGGCCGCTGCCCTCTTTCT 290
BSNT_00343___ 291 CATTTTGATGGGCGGGGGTTTTTTTAACAGCTGGCATAATGACCACAATT 340
||||||||||||.||..||.|.||||..||||||.|||..||.||.||||
BPUM_0161___y 291 CATTTTGATGGGAGGCAGTCTGTTTACAAGCTGGAATACGGATCATAATT 340
BSNT_00343___ 341 TCAGCGTGTCCAAGCAGCCGAATCTTGTGGTTCATAACCATACTGTGACC 390
||||.|||||.||.|||||||||||.||.|||...||..||||.||||||
BPUM_0161___y 341 TCAGTGTGTCAAAACAGCCGAATCTCGTCGTTGTAAATGATACAGTGACC 390
BSNT_00343___ 391 GTGCCAGAAGGTGAGACGGTCAAAGGTGATGTCACTGTCAAAAACGGCAA 440
||.||..||||.||.||.||.|||||||||||||||||||||||.|||||
BPUM_0161___y 391 GTACCTAAAGGGGAAACCGTAAAAGGTGATGTCACTGTCAAAAATGGCAA 440
BSNT_00343___ 441 GCTGATTATTAAAGGCAAAATAGACGGGGATGTAACCGTCGTAAACGGCG 490
|||||||.|..|||||||..|.||.||..||||.||||||||.||.||.|
BPUM_0161___y 441 GCTGATTGTAGAAGGCAAGGTTGATGGAAATGTCACCGTCGTCAATGGGG 490
BSNT_00343___ 491 AAAAGTATATGGCCTCTGCTGGACAAGTCACCGGTCAGATTGAAGAAATC 540
||.||...|..||.|||||.|||||||||||.|||||.|||.|.|||||.
BPUM_0161___y 491 AACAGCTGACTGCTTCTGCCGGACAAGTCACTGGTCAAATTAATGAAATT 540
BSNT_00343___ 541 AATCAATTATTCGACTGGACATGGTACAAGATGAAGTCTGCGGGGAAAAG 590
|||.||.||||.||.||||..||||||||.|||||.|||.|.|...|||.
BPUM_0161___y 541 AATGAAGTATTTGATTGGATTTGGTACAAAATGAAATCTACAGCACAAAA 590
BSNT_00343___ 591 TGTACTCGATG-----CATTCAATCCGAACGGAG-AAGAGTAA 627
||| |||| ||||..|.|.|| |||| ||.|||||
BPUM_0161___y 591 TGT----GATGCGGGTCATTGGACCAGA--GGAGCAAAAGTAA 627
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