Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06183 and BPUM_0159
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06183___rocF.1.24716.seq
# -bsequence dna-align/BPUM_0159___rocF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06183___rocF-BPUM_0159___rocF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06183___rocF-BPUM_0159___rocF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06183___rocF
# 2: BPUM_0159___rocF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 969
# Identity: 612/969 (63.2%)
# Similarity: 612/969 (63.2%)
# Gaps: 135/969 (13.9%)
# Score: 1724.5
#
#
#=======================================
BSNT_06183___ 1 ATG---GATAAAACGA----------TTTCGGTTATTGGAATGCCAATGG 37
||| ||..|||.|| |.|||| || |.|||||||
BPUM_0159___r 1 ATGGGAGAGCAAAAGAAAGTCACACTTGTCGG-----GG--TTCCAATGG 43
BSNT_06183___ 38 ATTTAGGACA-AGCACGACGCGGAGTAGATATGGGCCCGAGTGCCATCCG 86
||||.||.|| |..| ||.|.||.||.||.|||||.||||||||.||.||
BPUM_0159___r 44 ATTTGGGTCAGATGA-GAAGGGGTGTCGACATGGGACCGAGTGCGATTCG 92
BSNT_06183___ 87 GT----ACGCTCATCTGA-----TCGAGCGGCTGTCA----GACATGGGG 123
|| |.||..|...|| |.||...|||.||| ||
BPUM_0159___r 93 GTGTGCAGGCGTAAAAGAAAAATTGGAATCGCTTTCATTTGGA------- 135
BSNT_06183___ 124 TATACGGTTGAAGATCTCGGTGACATTCC-GATCAACCGCGAAAAA---- 168
||.|||||||||||.||.||||| |.|.||| |||.|
BPUM_0159___r 136 ------GTGGAAGATCTCGGAGATATTCCGGTTGAAC----AAAGAGATG 175
BSNT_06183___ 169 ATCAAAA--------ATGACGAG-GAA---CTGAAAAACCT------GAA 200
||.|||| || ||.|| ||| ||.|||||..| |||
BPUM_0159___r 176 ATGAAAAGGGTTTATAT-ACAAGTGAAAAGCTAAAAAATTTAACGGAGAA 224
BSNT_06183___ 201 TTCCGTTTTGGCGGGAA----ATGAAAAACTCGCGCAAAAGGTCAACAAA 246
|.| |||.|.||| .|| ||.||..|.|||||..|| |
BPUM_0159___r 225 TGC-----TGGTGCGAATCAGCTG-----CTGGCTGAGAAGGTTGAC--A 262
BSNT_06183___ 247 GTCATTGAAGAGAAA------AAATTCCCGCTTGTCCTGGGCGGTGACCA 290
|| ||| |.|.|| ..|||||||||..|..|.||||||||.||
BPUM_0159___r 263 GT-ATT---GTGCAATCAGGCTCATTCCCGCTCATTTTAGGCGGTGATCA 308
BSNT_06183___ 291 CAGTATTGCGATCGGCACGCTTGCAGGCACAGCGAAGCATTACGATAATC 340
|||.|||||.||.|||||.|||||.||...|.|.|||||.||.||.||..
BPUM_0159___r 309 CAGCATTGCCATTGGCACACTTGCGGGAGTATCCAAGCACTATGAAAACT 358
BSNT_06183___ 341 TCGGCGTCATCTGGTATGACGCGCACGGCGATTTGAATACACTTGAAACT 390
|.||.|||||.||||||||.||.|||||.|||||.||||||...||.||.
BPUM_0159___r 359 TAGGTGTCATTTGGTATGATGCACACGGTGATTTAAATACAGAGGAGACC 408
BSNT_06183___ 391 TCACCATCGGGCAATATTCACGGCATGCCGCTCGCGGTCAGCCTCGGCAT 440
||.||.||.||.|||||.||.||.||||||||.||.|||||.||.|||.|
BPUM_0159___r 409 TCTCCTTCTGGAAATATACATGGTATGCCGCTTGCAGTCAGTCTTGGCCT 458
BSNT_06183___ 441 TGGCCACGAGTCACTGGTT-----AACCTTGAAGGCTACGCGCCTAAAAT 485
|||.||.| |||.|| |||.|||..||.||..|.||.|||.|
BPUM_0159___r 459 TGGTCATG-----CTGATTTGACGAACATTGGTGGTTATTCTCCAAAATT 503
BSNT_06183___ 486 CAAACCGGAAAACGTCGTCATCATTGGCGCCCGGTCACTT-GATGAAGGG 534
.||.||.||.||.||.||..|.|||||.||..|.|| ||| ||||||||.
BPUM_0159___r 504 GAAGCCTGAGAATGTTGTTTTAATTGGTGCTAGATC-CTTAGATGAAGGA 552
BSNT_06183___ 535 GA--GCGCAAGTACATTA-AG-GAAAGCGGCATGAAGGTGTACACAATGC 580
|| |.||| |..|||| || |||| ||.||.||.|||||.||.||||
BPUM_0159___r 553 GAACGGGCA--TTGATTAGAGAGAAA--GGTATTAAAGTGTATACGATGC 598
BSNT_06183___ 581 ACGAAATCGACCGTCTTGGCATGACAAAGGTCATTGAAGAAACCCTTGAT 630
|.|||||.||.|||.|.||.|||||||.|||.||.||.||..||.||...
BPUM_0159___r 599 ATGAAATAGATCGTTTAGGGATGACAAGGGTGATGGAGGAGGCCATTTCA 648
BSNT_06183___ 631 TATTTA----TCAGCATGTGATGGCGTCCATCTGAGCCTTGATCTGGACG 676
|||||| ..||.|.| |||||.|||||.|||...||||||.|.||.|
BPUM_0159___r 649 TATTTAAAGGAAAGAACG-GATGGTGTCCACCTGTCACTTGATTTAGATG 697
BSNT_06183___ 677 GACTTGATCCGAACGACGCACCGGGTGTCGGAACCCCTGTCGTCGGCGGC 726
||.|.|||||...|||....||.|||||.|||||.|||||.|..||.|||
BPUM_0159___r 698 GATTAGATCCAGCCGAGTGTCCAGGTGTTGGAACTCCTGTGGCAGGAGGC 747
BSNT_06183___ 727 ATCAGCTATCGGGAGAGCCATTTGGCTATGGAAATGCTGT---ATGACGC 773
|||||.||.||||||||.|||.|.||.||||| |||.| |.||.||
BPUM_0159___r 748 ATCAGTTACCGGGAGAGTCATCTAGCCATGGA---GCTTTTAGAGGAAGC 794
BSNT_06183___ 774 AGGCATCATTACCTCAGCCGAATTCGTTGAGGTTAACCCGATCCTTGATC 823
.||.||..|.||.|||||.|||||.||||||||.||.|||.|..|.|||.
BPUM_0159___r 795 GGGTATTTTGACTTCAGCTGAATTTGTTGAGGTGAATCCGGTTTTGGATG 844
BSNT_06183___ 824 ACAAAAACAAAACGGGCAAAACAGCAGTAGAGCTGGTAGAATCTCTGCTA 873
|.|||||.|||||.|.|.||.||||.||.|.|.||.|.|..||..|..|.
BPUM_0159___r 845 AAAAAAATAAAACAGCCGAAGCAGCTGTTGCGTTGATTGGTTCGTTAATG 894
BSNT_06183___ 874 GG-GAAGAAGCTGCTGTAA 891
|| ||| |||||..||||.
BPUM_0159___r 895 GGCGAA-AAGCTATTGTAG 912
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