Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00306 and BPUM_0152
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00306___ybaS.1.24716.seq
# -bsequence dna-align/BPUM_0152.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00306___ybaS-BPUM_0152.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00306___ybaS-BPUM_0152.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00306___ybaS
# 2: BPUM_0152
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 638/1018 (62.7%)
# Similarity: 638/1018 (62.7%)
# Gaps: 149/1018 (14.6%)
# Score: 1886.5
#
#
#=======================================
BSNT_00306___ 1 ------------------------------------ATGCCGCTGTTGAC 14
|||||..|..|.||
BPUM_0152 1 ATGCTTGTGCGTTTGAACCAAGTGCTCGGCCGTATGATGCCATTTATTAC 50
BSNT_00306___ 15 GCCGACTAGTGTGGTGCTGGGCGT-------GCTGCTGTCTCAGTTTTTA 57
|||.|.||||||..|.||.||.|| ||.||| |.||||
BPUM_0152 51 GCCTATTAGTGTATTACTTGGTGTTTTATTGGCGGCT-------TATTTA 93
BSNT_00306___ 58 AATGGGTATGA-----ATGGGCTGTGCCTTGGATCTTTGCTTTTATTACG 102
|| ||.|.|.| ||| ||.||||||.|.|||||..||||.||.
BPUM_0152 94 AA-GGATTTTACGTTTATG----GTACCTTGGGTATTTGCCATTATGACA 138
BSNT_00306___ 103 TTTGCAGGCAGTTTGAGCGCGAAC--TTTCAATCTTTGAGACATGCATTG 150
|||.||||.||.||| .||...|| |||| |.||||.|.||||.|..||
BPUM_0152 139 TTTTCAGGGAGCTTG-TCGTCTACTTTTTC-AGCTTTAAAACATACGGTG 186
BSNT_00306___ 151 TCTCATCCTCTCCCTATGATTCTTGCACTATTCG-------TTCTTCATA 193
...|||||..|.|||.||||| |..||| ||.|.|||.
BPUM_0152 187 ATGCATCCATTGCCTTTGATT-------TTATCGTTTATGATTTTGCATG 229
BSNT_00306___ 194 TTTTCATGCCGCTTTTTGCTTGGGGCAGC-GGCCATCTTATATTTAAAGG 242
|.||.|||||.||.|.||||| ||.|||| ||.|||.|.||||||...||
BPUM_0152 230 TGTTGATGCCTCTGTATGCTT-GGTCAGCGGGGCATTTGATATTTGCGGG 278
BSNT_00306___ 243 TGATCCTTTGACGATTACCGGTTTAACATTGGCTGTTGTGATTCCTACGG 292
||||.||.||||||||||||||||.||..|.||..|.||||||||.||.|
BPUM_0152 279 TGATTCTATGACGATTACCGGTTTGACGCTTGCGATGGTGATTCCGACAG 328
BSNT_00306___ 293 GGATTACAAGCTTGATTTGGGCAGCGATGTACAAAGGGAATGTCGGTTTG 342
|..|..|.||.||.||.|||||.||.|||||.||||||||||||||.||.
BPUM_0152 329 GTGTGTCTAGTTTAATATGGGCGGCAATGTATAAAGGGAATGTCGGATTA 378
BSNT_00306___ 343 ACACTTTCGATTATTTTAATTGATACTGTGCTGTCACCGCTAATCGTACC 392
||..|.||.||.||||||||.|||||..||||.||.||..|.||.||.||
BPUM_0152 379 ACGTTGTCTATCATTTTAATAGATACATTGCTTTCGCCATTGATTGTGCC 428
BSNT_00306___ 393 GCTGAGTCTT-TCATTGCTGGCCGGCGCTCAGGTTCACATGG--ATGTGT 439
..|.|| ||| |||.|..|.|.|||..|.|||||.||.|||| ||| ||
BPUM_0152 429 AGTAAG-CTTGTCACTCTTCGTCGGTACACAGGTCCATATGGACATG-GT 476
BSNT_00306___ 440 GGGGAATGATGAAAGGTCTGATTGTAATGGTCGTGATTCCTTCTTTTTTG 489
||.| ||.||||||||.|||.|.|..|||||.|||.|.||.|||.||||.
BPUM_0152 477 GGCG-ATCATGAAAGGGCTGTTCGGTATGGTGGTGCTGCCCTCTATTTTA 525
BSNT_00306___ 490 GGCATGCTGTTTAATCAG-ATGTCATCTCCAGAAAGAACTGCGTCTGTG- 537
||.|||||..||..|||| ||| .|||| .|.||.|||
BPUM_0152 526 GGGATGCTCGTTCGTCAGTATG---------CAAAG----CCATCGGTGA 562
BSNT_00306___ 538 ----AGCAGTG-------CGCTGTCGCCTTTTTCAAA-----GCTTTGCT 571
||||.|| |..||.|.||||||||||| || |||.|
BPUM_0152 563 CAAAAGCAATGAGTCAGACCTTGGCTCCTTTTTCAAAATTAGGC-TTGTT 611
BSNT_00306___ 572 TGATGGCAGTGATTGCGATTAACAGTTCAGCGATTGCTCCTTATTT-CAA 620
||.||.| || || |||||||||||||.|...|.||.||.||||| |
BPUM_0152 612 TGTTGTC-GT-AT--CGATTAACAGTTCTGTTGTCGCCCCATATTTGC-- 655
BSNT_00306___ 621 ATCCATTGATTTGAGA--------TTTGCAGGAATAGCTGTAACGGTATT 662
.|||.||| || |||..||.|| |||.|..||.||.||
BPUM_0152 656 -----GTGAATTG-GATGCTGCCTTTTTTAGCAA-AGCAGCGACTGTCTT 698
BSNT_00306___ 663 CTTTATCGCGTTAACAGGCTATGCCGCTGCTTGGCTGATCGGAAAAATGA 712
.||.||.|||.|.|..||.|||||...|||.|||.||||.|||||..|||
BPUM_0152 699 TTTCATTGCGATGAGTGGTTATGCATTTGCGTGGTTGATTGGAAAGGTGA 748
BSNT_00306___ 713 TGAAAAGGCGGCAAGAGGAAATAGTCTCTCTTATATTTACGGGAGGGATG 762
|||||.|....||||.|||.||.||..|..||.|.|.||||||.||.|||
BPUM_0152 749 TGAAATGTACTCAAGGGGAGATTGTTGCCATTGTGTATACGGGCGGCATG 798
BSNT_00306___ 763 AGGAATATTAGTGCCGGCGCAGTTCTTGCCGTTACGTTCTTCCCGTCTCA 812
||.||||||||||||||.||.||.|||||..|||..||.||||||.||..
BPUM_0152 799 AGAAATATTAGTGCCGGAGCTGTGCTTGCGATTAGCTTTTTCCCGCCTGC 848
BSNT_00306___ 813 GGTTGCCGTTCCTGTTGTGATCGGCATGCTGTTTCAGCAGATATTGGCTG 862
.||.||.||||||||||||||.||.||||||||||||||..||.|.||||
BPUM_0152 849 TGTGGCTGTTCCTGTTGTGATTGGTATGCTGTTTCAGCAAGTACTTGCTG 898
BSNT_00306___ 863 CTTTGTTTGGCTATATGCTGAATCGTTTTGAATTAAAACCA----ATGTT 908
|.||||||||.|...|.||.|||||||||||..|||||.|| .|||.
BPUM_0152 899 CCTTGTTTGGTTCCTTACTCAATCGTTTTGAGCTAAAAGCACCTGCTGTG 948
BSNT_00306___ 909 GCAGAA-----AGCATAA 921
.|..|| |.|||.|
BPUM_0152 949 ACTAAATCTTTAACATGA 966
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