Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00264 and BPUM_0146

See Amino acid alignment / Visit BSNT_00264 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:13
# Commandline: needle
#    -asequence dna-align/BSNT_00264___gerD.1.24716.seq
#    -bsequence dna-align/BPUM_0146___gerD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00264___gerD-BPUM_0146___gerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00264___gerD-BPUM_0146___gerD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00264___gerD
# 2: BPUM_0146___gerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     413/594 (69.5%)
# Similarity:   413/594 (69.5%)
# Gaps:          54/594 ( 9.1%)
# Score: 1379.5
# 
#
#=======================================

BSNT_00264___      1 ATGTCAAAAGCCAAAACGCTATTG------ATGAGCTGTTTTTTGTTATT     44
                     ||||||||||.||      |.|||      ||||||||||||.|..|.||
BPUM_0146___g      1 ATGTCAAAAGGCA------TCTTGCGTATAATGAGCTGTTTTCTCCTTTT     44

BSNT_00264___     45 ATCTGTAACAGCTTGCGCTCCAAAAGACCAA---GCAGCGGATATGGACT     91
                     ||||.||||||||||.|||||.|||..||||   .||.|..|||||||||
BPUM_0146___g     45 ATCTCTAACAGCTTGTGCTCCCAAAACCCAATCCTCATCTAATATGGACT     94

BSNT_00264___     92 ATGATCAGACCAAAAAAATGGTTGTTGATATATTAAAAACTGATGATGGA    141
                     ||||..|.||.||.||||||||.||.||||||||.||.||.|||||.||.
BPUM_0146___g     95 ATGACGAAACAAAGAAAATGGTCGTCGATATATTGAAGACAGATGACGGT    144

BSNT_00264___    142 AAGAAAGCTATTAAGGAATTATTAAATGATGATGCCATGAATGAAGCGCT    191
                     ||.||.||.|||.|..|.|||||||||||.||.||.|||||||||||..|
BPUM_0146___g    145 AAAAAGGCCATTCAACAGTTATTAAATGACGAGGCAATGAATGAAGCTTT    194

BSNT_00264___    192 GGTGAT---TGACCAAGATGCAATTAAAGGAACAATAGAAAAAACACTCA    238
                     |||.||   |||.|||..||   |.|||..|||.|||||.||||||||.|
BPUM_0146___g    195 GGTAATGGATGAACAAACTG---TGAAACAAACGATAGAGAAAACACTGA    241

BSNT_00264___    239 CATCTAAAAAAGGTGAAGAATTTTGGAAAAACATCTTTGAAGACACTGAT    288
                     |.|||.|.|||||..||||.||.|||||.||..|||||||.||..||.|.
BPUM_0146___g    242 CTTCTGATAAAGGCAAAGAGTTCTGGAAGAAGGTCTTTGAGGATTCTAAA    291

BSNT_00264___    289 TTTGCTGAGGGCTTTGCCAAAACTC--TTCAGACAGAGCATGAAAAAGTG    336
                     |||||.|| |.||||..||||| ||  |.|||..|.||||||||||..||
BPUM_0146___g    292 TTTGCCGA-GACTTTCGCAAAA-TCCATGCAGCAACAGCATGAAAAGATG    339

BSNT_00264___    337 ATTAAAA-AGCTGATGAAGGATCCAGATTACCAGAAGATGCTGATGAGCG    385
                      |||||| ||.|.|||||.||.||.||.||.|||.|..||.|||||   |
BPUM_0146___g    340 -TTAAAACAGTTAATGAAAGACCCTGACTATCAGCAATTGATGATG---G    385

BSNT_00264___    386 TTATGC---AGGATCCCGGCATGGATAAAAAGTACAGCCAGCTGGCAAAA    432
                     .|||.|   |||||||.|..|||||.||.||.|||.|..|.||||.||||
BPUM_0146___g    386 ATATTCTCAAGGATCCTGAAATGGAAAAGAAATACGGTGAACTGGTAAAA    435

BSNT_00264___    433 AGCCAAGAATTCCGCAGTTATTTAGAAGAGGTTATTAACGAAACACTTTC    482
                     |||.||||.|||.|.|...||||||||.|.||.||||..||||||.|...
BPUM_0146___g    436 AGCAAAGAGTTCAGAAAGCATTTAGAAAAAGTGATTACGGAAACATTAAG    485

BSNT_00264___    483 TAGTCCGCTTTACAAAAAGCAGTTCGAAGATGAGCTGAAAAAAGCAGCA-    531
                     .|||||.||.||.||.|||.|.||||||||||||||.|||||||||||| 
BPUM_0146___g    486 CAGTCCTCTCTATAAGAAGAAATTCGAAGATGAGCTTAAAAAAGCAGCAT    535

BSNT_00264___    532 ---AAA-----GACAC---AGCCAAAGAA------AGTGAATAA    558
                        |||     ||..|   |.|.||||||      |||.||   
BPUM_0146___g    536 CTGAAAGTAGTGATTCTGGATCAAAAGAAAGCGGCAGTTAA---    576


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