Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00264 and BPUM_0146
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00264___gerD.1.24716.seq
# -bsequence dna-align/BPUM_0146___gerD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00264___gerD-BPUM_0146___gerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00264___gerD-BPUM_0146___gerD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00264___gerD
# 2: BPUM_0146___gerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity: 413/594 (69.5%)
# Similarity: 413/594 (69.5%)
# Gaps: 54/594 ( 9.1%)
# Score: 1379.5
#
#
#=======================================
BSNT_00264___ 1 ATGTCAAAAGCCAAAACGCTATTG------ATGAGCTGTTTTTTGTTATT 44
||||||||||.|| |.||| ||||||||||||.|..|.||
BPUM_0146___g 1 ATGTCAAAAGGCA------TCTTGCGTATAATGAGCTGTTTTCTCCTTTT 44
BSNT_00264___ 45 ATCTGTAACAGCTTGCGCTCCAAAAGACCAA---GCAGCGGATATGGACT 91
||||.||||||||||.|||||.|||..|||| .||.|..|||||||||
BPUM_0146___g 45 ATCTCTAACAGCTTGTGCTCCCAAAACCCAATCCTCATCTAATATGGACT 94
BSNT_00264___ 92 ATGATCAGACCAAAAAAATGGTTGTTGATATATTAAAAACTGATGATGGA 141
||||..|.||.||.||||||||.||.||||||||.||.||.|||||.||.
BPUM_0146___g 95 ATGACGAAACAAAGAAAATGGTCGTCGATATATTGAAGACAGATGACGGT 144
BSNT_00264___ 142 AAGAAAGCTATTAAGGAATTATTAAATGATGATGCCATGAATGAAGCGCT 191
||.||.||.|||.|..|.|||||||||||.||.||.|||||||||||..|
BPUM_0146___g 145 AAAAAGGCCATTCAACAGTTATTAAATGACGAGGCAATGAATGAAGCTTT 194
BSNT_00264___ 192 GGTGAT---TGACCAAGATGCAATTAAAGGAACAATAGAAAAAACACTCA 238
|||.|| |||.|||..|| |.|||..|||.|||||.||||||||.|
BPUM_0146___g 195 GGTAATGGATGAACAAACTG---TGAAACAAACGATAGAGAAAACACTGA 241
BSNT_00264___ 239 CATCTAAAAAAGGTGAAGAATTTTGGAAAAACATCTTTGAAGACACTGAT 288
|.|||.|.|||||..||||.||.|||||.||..|||||||.||..||.|.
BPUM_0146___g 242 CTTCTGATAAAGGCAAAGAGTTCTGGAAGAAGGTCTTTGAGGATTCTAAA 291
BSNT_00264___ 289 TTTGCTGAGGGCTTTGCCAAAACTC--TTCAGACAGAGCATGAAAAAGTG 336
|||||.|| |.||||..||||| || |.|||..|.||||||||||..||
BPUM_0146___g 292 TTTGCCGA-GACTTTCGCAAAA-TCCATGCAGCAACAGCATGAAAAGATG 339
BSNT_00264___ 337 ATTAAAA-AGCTGATGAAGGATCCAGATTACCAGAAGATGCTGATGAGCG 385
|||||| ||.|.|||||.||.||.||.||.|||.|..||.||||| |
BPUM_0146___g 340 -TTAAAACAGTTAATGAAAGACCCTGACTATCAGCAATTGATGATG---G 385
BSNT_00264___ 386 TTATGC---AGGATCCCGGCATGGATAAAAAGTACAGCCAGCTGGCAAAA 432
.|||.| |||||||.|..|||||.||.||.|||.|..|.||||.||||
BPUM_0146___g 386 ATATTCTCAAGGATCCTGAAATGGAAAAGAAATACGGTGAACTGGTAAAA 435
BSNT_00264___ 433 AGCCAAGAATTCCGCAGTTATTTAGAAGAGGTTATTAACGAAACACTTTC 482
|||.||||.|||.|.|...||||||||.|.||.||||..||||||.|...
BPUM_0146___g 436 AGCAAAGAGTTCAGAAAGCATTTAGAAAAAGTGATTACGGAAACATTAAG 485
BSNT_00264___ 483 TAGTCCGCTTTACAAAAAGCAGTTCGAAGATGAGCTGAAAAAAGCAGCA- 531
.|||||.||.||.||.|||.|.||||||||||||||.||||||||||||
BPUM_0146___g 486 CAGTCCTCTCTATAAGAAGAAATTCGAAGATGAGCTTAAAAAAGCAGCAT 535
BSNT_00264___ 532 ---AAA-----GACAC---AGCCAAAGAA------AGTGAATAA 558
||| ||..| |.|.|||||| |||.||
BPUM_0146___g 536 CTGAAAGTAGTGATTCTGGATCAAAAGAAAGCGGCAGTTAA--- 576
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